mixed-models | Topic | Ecosyste.ms: Repos

Topic: "mixed-models"

easystats/performance

:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)

Language: R - Size: 690 MB - Last synced at: 5 days ago - Pushed at: 10 days ago - Stars: 1,067 - Forks: 97

JuliaStats/MixedModels.jl

A Julia package for fitting (statistical) mixed-effects models

Language: Julia - Size: 39.7 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 420 - Forks: 49

ejolly/pymer4

All the convenience of lme4 in python

Language: Python - Size: 7.86 MB - Last synced at: 5 days ago - Pushed at: 25 days ago - Stars: 199 - Forks: 26

m-clark/Miscellaneous-R-Code

Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. **Superseded by the models-by-example repo**.

Language: R - Size: 11.2 MB - Last synced at: 14 days ago - Pushed at: over 4 years ago - Stars: 196 - Forks: 82

strengejacke/sjstats

Effect size measures and significance tests

Language: R - Size: 5.25 MB - Last synced at: 15 days ago - Pushed at: about 2 months ago - Stars: 190 - Forks: 21

neuropsychology/psycho.R

An R package for experimental psychologists

Language: R - Size: 7.36 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 149 - Forks: 32

m-clark/mixed-models-with-R

Covers the basics of mixed models, mostly using @lme4

Language: R - Size: 58.8 MB - Last synced at: 28 days ago - Pushed at: about 3 years ago - Stars: 137 - Forks: 42

drizopoulos/JMbayes2

Extended Joint Models for Longitudinal and Survival Data

Language: R - Size: 368 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 84 - Forks: 24

oliviergimenez/bayesian-stats-with-R

Material for a workshop on Bayesian stats with R

Language: HTML - Size: 68 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 71 - Forks: 22

m-clark/mixedup

An R package for extracting results from mixed models that are easy to use and viable for presentation.

Language: R - Size: 166 MB - Last synced at: 28 days ago - Pushed at: over 2 years ago - Stars: 69 - Forks: 2

m-clark/models-by-example

By-hand code for models and algorithms. An update to the 'Miscellaneous-R-Code' repo.

Language: R - Size: 26.2 MB - Last synced at: 28 days ago - Pushed at: about 4 years ago - Stars: 67 - Forks: 18

m-clark/visibly

👓 Functions related to R visualizations

Language: R - Size: 88.4 MB - Last synced at: 28 days ago - Pushed at: over 4 years ago - Stars: 62 - Forks: 4

drizopoulos/GLMMadaptive

GLMMs with adaptive Gaussian quadrature

Language: R - Size: 22.9 MB - Last synced at: 16 days ago - Pushed at: about 2 months ago - Stars: 60 - Forks: 14

bambinos/formulae

Formulas for mixed-effects models in Python

Language: Python - Size: 6.69 MB - Last synced at: 23 days ago - Pushed at: 3 months ago - Stars: 58 - Forks: 14

unfoldtoolbox/Unfold.jl

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

Language: Julia - Size: 66.3 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 55 - Forks: 12

covaruber/sommer

Language: R - Size: 30.2 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 47 - Forks: 27

huffyhenry/statsbomb-bayesian-shooting

Bayesian estimation of the finishing skill of football players

Language: R - Size: 314 KB - Last synced at: 1 day ago - Pushed at: over 7 years ago - Stars: 40 - Forks: 8

strengejacke/mixed-models-snippets

This repository collects various small code snippets or short instructions on how to use or define specific mixed models, mostly with packages lme4 and glmmTMB.

Language: R - Size: 4.8 MB - Last synced at: 24 days ago - Pushed at: about 2 years ago - Stars: 36 - Forks: 7

randel/MixRF

A random-forest-based approach for imputing clustered incomplete data

Language: R - Size: 182 KB - Last synced at: about 18 hours ago - Pushed at: almost 8 years ago - Stars: 35 - Forks: 14

cran-task-views/MixedModels

CRAN Task View: Mixed, Multilevel, and Hierarchical Models in R

Language: R - Size: 169 KB - Last synced at: 6 days ago - Pushed at: 17 days ago - Stars: 27 - Forks: 10

RePsychLing/SMLP2021 📦

Notebooks for SMLP2021

Language: Julia - Size: 18.1 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 27 - Forks: 7

m-clark/generalized-additive-models-workshop-2019

A workshop on using generalized additive models and the mgcv package.

Language: R - Size: 15.2 MB - Last synced at: 28 days ago - Pushed at: about 6 years ago - Stars: 27 - Forks: 16

PharmCat/Metida.jl

Julia package for fitting mixed-effects models with flexible random/repeated covariance structure.

Language: Julia - Size: 5.56 MB - Last synced at: 20 days ago - Pushed at: 3 months ago - Stars: 26 - Forks: 0

m-clark/mixed-models-with-r-workshop-2019

Workshop on using Mixed Models with R

Language: R - Size: 6.66 MB - Last synced at: 28 days ago - Pushed at: about 6 years ago - Stars: 25 - Forks: 6

timeu/PyGWAS

Language: Python - Size: 63.3 MB - Last synced at: 16 days ago - Pushed at: over 6 years ago - Stars: 24 - Forks: 11

Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:

Language: R - Size: 97.9 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 23 - Forks: 17

myles-lewis/glmmSeq

Gene-level general linear mixed model

Language: R - Size: 13.9 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 21 - Forks: 10

AIH-SGML/mixmil

Code for the paper: Mixed Models with Multiple Instance Learning

Language: Jupyter Notebook - Size: 587 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 19 - Forks: 2

RePsychLing/MixedModelsSim.jl

Simulation tools for Mixed Models

Language: Julia - Size: 1.93 MB - Last synced at: 5 days ago - Pushed at: 5 months ago - Stars: 19 - Forks: 4

JuliaMixedModels/EmbraceUncertainty

The book "Embrace Uncertainty: Fitting Mixed-Effects Models with Julia"

Language: TeX - Size: 55.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 19 - Forks: 1

briencj/asremlPlus

asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models

Language: R - Size: 68.5 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 18 - Forks: 3

kdzimm/PseudoreplicationPaper

Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study

Language: HTML - Size: 716 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 18 - Forks: 5

matsueushi/kubo_analysis_julia

「データ解析のための統計モデリング入門」のJulia版Jupyter Notebook

Language: Jupyter Notebook - Size: 16.6 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 18 - Forks: 2

mkearney/tidymlm

🎓 Tidy multilevel modeling tools for academics

Language: R - Size: 259 KB - Last synced at: 15 days ago - Pushed at: over 6 years ago - Stars: 17 - Forks: 0

m-clark/mixed-models-with-R-workshop

This is the companion slides, data, and RStudio project for a workshop on mixed models.

Size: 41.5 MB - Last synced at: 18 days ago - Pushed at: over 4 years ago - Stars: 14 - Forks: 3

m-clark/gammit

Functions for using mgcv for mixed models. 📈

Language: R - Size: 5.72 MB - Last synced at: 28 days ago - Pushed at: over 4 years ago - Stars: 14 - Forks: 4

Biometris/LMMsolver

See https://biometris.github.io/LMMsolver for a full description

Language: R - Size: 30.4 MB - Last synced at: 7 days ago - Pushed at: about 2 months ago - Stars: 13 - Forks: 2

palday/JellyMe4.jl

RCall support for MixedModels.jl and lme4

Language: Julia - Size: 148 KB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 13 - Forks: 2

SchmidtPaul/MMFAIR

:chart_with_upwards_trend::seedling: Mixed Models for Agriculture in R

Language: HTML - Size: 8.39 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 0

fboehm/gemma2

Zhou & Stephens (2014) GEMMA multivariate linear mixed model

Language: R - Size: 5.74 MB - Last synced at: 26 days ago - Pushed at: over 4 years ago - Stars: 13 - Forks: 2

m-clark/more-mixed-models-2019

Demonstration of alternatives to lme4

Language: R - Size: 6.32 MB - Last synced at: 28 days ago - Pushed at: over 5 years ago - Stars: 13 - Forks: 1

m-clark/R-models

A quick reference for how to run many models in R.

Language: R - Size: 21 MB - Last synced at: 28 days ago - Pushed at: almost 7 years ago - Stars: 13 - Forks: 1

DominiqueMakowski/CognitiveModels

Cognitive Models: Computational Modeling of Cognitive Processes with Bayesian Mixed Models in Julia

Language: Jupyter Notebook - Size: 150 MB - Last synced at: 6 days ago - Pushed at: 8 months ago - Stars: 12 - Forks: 3

m-clark/docs

Documents that go into methodological detail regarding various statistical procedures.

Language: TeX - Size: 130 MB - Last synced at: 28 days ago - Pushed at: over 6 years ago - Stars: 11 - Forks: 4

jr-leary7/scLANE

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

Language: R - Size: 31.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 3

bdilday/mnre

multinomial random effects

Language: C++ - Size: 590 KB - Last synced at: 25 days ago - Pushed at: almost 7 years ago - Stars: 10 - Forks: 0

palday/MixedModelsMakie.jl

Plotting functionality for MixedModels.jl implemented in Makie

Language: Julia - Size: 4.84 MB - Last synced at: 4 days ago - Pushed at: 19 days ago - Stars: 9 - Forks: 2

suren-rathnayake/deepgmm

This package is provides a mixture model based approach for deep learning.

Language: R - Size: 138 KB - Last synced at: 12 days ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 3

monk1337/Mixclu

A Python package for unsupervised mixed datatypes clustering

Language: Jupyter Notebook - Size: 860 KB - Last synced at: 17 days ago - Pushed at: about 3 years ago - Stars: 9 - Forks: 2

timotheenivalis/RSB-R-Stats-Biology

Second year of the workshop series on biological statistics in R at RSB, ANU.

Language: HTML - Size: 71.3 MB - Last synced at: 12 months ago - Pushed at: about 5 years ago - Stars: 8 - Forks: 7

rentzb/bayesian-pape

Introduction to rstanarm

Language: HTML - Size: 3.6 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 7 - Forks: 3

palday/MixedModelsExtras.jl

Extra non essential functionality for MixedModels.jl

Language: Julia - Size: 655 KB - Last synced at: 25 days ago - Pushed at: 5 months ago - Stars: 6 - Forks: 1

biol609/biol609.github.io

Course website and materials for Biology 609, Advanced Data Analysis for Biology, at UMass Boston

Language: HTML - Size: 298 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 6 - Forks: 4

stanbiryukov/sklearn-GLMM

scikit-learn wrapper for generalized linear mixed model methods in R

Language: Python - Size: 71.3 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 2

baogorek/glmmplus Fork of google/glmmplus

glmmplus is an R package based on the notion that missing data is a fundamental part of nearly any analysis and that the flagship procedures that allow fitting of linear models and variable selection should include better options than ejecting rows for dealing with missing values.

Language: R - Size: 792 KB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 6 - Forks: 0

matthewwolak/gremlin

R package for mixed-effects REML incorporating Generalized Inverses

Language: R - Size: 1020 KB - Last synced at: 18 days ago - Pushed at: 6 months ago - Stars: 5 - Forks: 1

SchmidtPaul/crashcouRse

:chart_with_downwards_trend::seedling: R für Bio- und Agrarwissenschaftler

Language: HTML - Size: 16.4 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

m-clark/mixed-models-growth-curves-simulation

Raw files for a document simulating models for longitudinal data (mixed models and growth curve models).

Language: R - Size: 734 KB - Last synced at: 28 days ago - Pushed at: over 7 years ago - Stars: 5 - Forks: 3

RePsychLing/SMLP2024 📦

SMLP2024: Advanced methods in frequentist statistics with Julia

Language: Julia - Size: 22.1 MB - Last synced at: 17 days ago - Pushed at: 22 days ago - Stars: 4 - Forks: 4

palday/MixedModelsPermutations.jl

Permutation tests for MixedModels.jl

Language: Julia - Size: 723 KB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 2

inbo/inlatools

An R package with useful functions to diagnose INLA models

Language: R - Size: 7.65 MB - Last synced at: 15 days ago - Pushed at: 7 months ago - Stars: 4 - Forks: 2

systemallica/morfist Fork of donlnz/morfist

Multi-target Random Forest implementation that can mix both classification and regression tasks.

Language: Python - Size: 1.32 MB - Last synced at: 13 days ago - Pushed at: 12 months ago - Stars: 4 - Forks: 1

boennecd/pedmod

R package with quasi-Monte Carlo methods to estimate mixed models commonly used for random effect structures from pedigrees.

Language: HTML - Size: 41 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

hse-scila/mixed-effects-models

Curated list of the sources about multilevel models

Size: 7.81 KB - Last synced at: 3 days ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 3

m-clark/easy-bayes

Workshop to introduce participants to rstanarm and brms.

Language: R - Size: 41.1 MB - Last synced at: 28 days ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 2

jamesmurray7/gmvjoint

Generalised joint models of survival and multivariate longitudinal data

Language: R - Size: 26.8 MB - Last synced at: 14 days ago - Pushed at: 7 months ago - Stars: 3 - Forks: 1

antot/postediting_novel_frontiers

Language: HTML - Size: 2.81 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

xinkai-zhou/MixedModelsBLB.jl

A Julia package for analyzing massive longitudinal data using Linear Mixed Models (LMMs) through the Bag of Little Bootstrap (BLB) method.

Language: Julia - Size: 908 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

AnisZakari/Fake_review_detection

Creating an algorithm with Tensorflow to detect fake reviews

Language: Jupyter Notebook - Size: 95.9 MB - Last synced at: 12 months ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 0

johnjdavisiv/rmba

An easy-to-use R function for repeated-measure Bland-Altman analysis with mixed models

Language: R - Size: 116 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

tamas-ferenci/TumorGrowthModels

Simple mixed-effects growth models applied to tumor growth (modeling the effect of treatment and measurement method)

Language: R - Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0

UniversityProjects/FEM2

FEM for parabolic and mixed problems

Language: Matlab - Size: 2.4 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 3 - Forks: 0

PharmCat/MetidaBioeq.jl

This packege made foe bioequivalence testing.

Language: Julia - Size: 779 KB - Last synced at: about 2 hours ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

WevertonGomesCosta/Genomic-Selection-for-Drought-Tolerance-Using-Genome-Wide-SNPs-in-Casava

This website is a project for analysis of the Genomic Selection for Drought Tolerance Using Genome Wide GBS and/or DART in Cassava by EMBRAPA Mandioca.

Language: R - Size: 241 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

johannes-titz/mimosa

The mixed model special agent

Language: R - Size: 8.77 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

comptelab/serialNMDA

This repository contains all codes necessary to reproduce figures and results reported in Stein, Barbosa et al. (Nature Communications, 2020) from the raw data acquired in human behavioral experiments (data included in the repository), and from the relevant model simulations.

Language: Python - Size: 10.2 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2

cbg-ethz/perturbatr

Analysis of high-throughput genetic perturbation screens in R.

Language: R - Size: 31.2 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

psych-zhangguangyao/WorkShop

Some learning materials of statistics

Size: 5.29 MB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

m-clark/clustered-data

Raw files for a document covering different approaches to dealing with dependent data.

Language: R - Size: 2.31 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

stappit/semipyrametric-statistics

Python implementations of semiparametric statistical techniques.

Language: Python - Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1

m-clark/mixed-models-anova

Raw files for a document introducing mixed models for those familiar with ANOVA.

Language: R - Size: 383 KB - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 0

m-clark/mixed-models-growth-curves

Raw files for a document comparing mixed models and growth curve models (sem).

Language: R - Size: 1.13 MB - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1

Uzezi93/Biostatistics-and-Experimental-Design

All homeworks submitted for the Biostatistics and Experimental Design Course BIOL 607 in Fall 2020

Language: HTML - Size: 7.73 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

mccarthy-m-g/alda

An R data package for the book "Applied longitudinal data analysis: Modeling change and event occurrence" by Singer and Willett (2003).

Language: R - Size: 15 MB - Last synced at: 21 days ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1

jinghuazhao/Mixed-Models

Mixed Models with polygenic effects

Language: TeX - Size: 247 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

ljacquin/KRMM

Solves kernel ridge regression within the the mixed model framework. All the estimated components and parameters, e.g. BLUP of dual variables and BLUP of random predictor effects for the linear kernel (also known as RR-BLUP), are available.

Language: R - Size: 24.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

IbrahimElzahaby/Statistics_for_Data_Scientists_-SDS-

SDS course assignments

Language: R - Size: 439 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

palday/krakow2023

Language: TeX - Size: 2.17 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

benrjbrown/Three_Level_Mixed_Model_of_Classroom_Data

This three level mixed model seeks to understand which variables mediated and moderated the relationship between demographic factors of children and educators, and measures of inappropriate behaviour (DESSA Mini Scale) and physical literacy (TEAF Clinical Scale).

Language: R - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0