Topic: "hpc-applications"
bonartm/cheopsr
R package for talking to the HPC cluster at the University of Cologne
Language: R - Size: 44.9 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
openmole/gama-plugin-old Fork of gnoubi/openMoleGamaPlugin 📦
Plugin Gama for OpenMole application
Language: Scala - Size: 202 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1
siravan/CuDiff.jl
Language: Julia - Size: 62.5 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
jose-d/ceico-easybuilder
Wrapper for Easybuild building list of software in container
Language: Shell - Size: 35.2 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
cstyl/omp-scheduling
Experiments with the loop scheduling options in OpenMP and creation of affinity loop scheduling in C.
Language: Python - Size: 742 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2
ravenschade/chpclog
Language: C - Size: 55.7 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0
nompelis/INMPI
A library of MPI utility functions. (Nothing yet to see here.)
Language: C - Size: 10.7 KB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0
gabyx/HPCJobConfigurator
Python module to generate highly configurable user-defined jobs on a high-performance cluster
Language: Python - Size: 5.57 MB - Last synced at: 4 months ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0
Rocketgraphai/rocketgraph
Rocketgraph Mission Control
Size: 56.6 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
ratem/bart.dias
Bart.dIAs is the WebGRIPP Project's Coding Assistant. Currently it is a simple (parallel) coding assistant.
Language: Python - Size: 378 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
fourzerosix/hpc-test-suite
Benchmarking/Stress-Testing/Functionality Application Suite for Linux Clusters with an Emphasis on Data Science and Bioinformatics
Language: Shell - Size: 130 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
akilandrews/hecbench-openmp-builder
Bash build scripts for HeCBench OpenMP offload benchmarks
Language: Shell - Size: 8.79 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
MarioInf-Master-CompuerScience-UCM/ComputacionAltasPrestaciones
Repositorio de trabajo de la asignatura "Computación de altas prestaciones" (curso 22-23), perteneciente al Máster en Ingeniería Informática de la Universidad Complutense de Madrid (UCM)
Language: C++ - Size: 222 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
insigneo-pfire/pFIRE Fork of INSIGNEO/pFIRE
The Parallel Framework for Image Registration
Language: C++ - Size: 31.2 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1
dongd908/Flexmap
Efficient Large-Scale Model Inference on Edge NPUs via Adaptive Subgraph Repartitioning
Language: C++ - Size: 46.9 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
nimbix/app-openfoam
Language: Shell - Size: 2.69 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
AndreVale69/SE4HPC_project_part2
Second (part 2) university project of the Software Engineering for HPC course.
Language: C++ - Size: 235 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
babessell1/FastqToGeneCounts Fork of HelikarLab/FastqToGeneCounts
Snakemake pipeline for use in computing cluster to pull RNA-seq fastq reads from GEO, trim, run quality checks and align. Output interfaces with MADRID
Language: Python - Size: 2.25 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
DATAOORTS/EverRun-Demo
EverRun By Dataoorts
Language: Jupyter Notebook - Size: 167 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
PoliMI-HPC-E-notes-projects-AndreVale69/SE4HPC_project_RD
First university project of the Software Engineering for HPC course.
Size: 4.72 MB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Sinan81/sinan81.github.io
miscellaneous stuff
Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Farhateberr/Ferhat-dz
Config files for my GitHub profile.
Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lunarc/mbrowser
LMOD Graphical module browser
Language: Python - Size: 53.7 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Zlisch/LargeMM
A CUBLAS‐CUDA Based Implementation of Multi-GPU Large Matrix Multiplication
Language: Cuda - Size: 196 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ml4py/speclus4py
Spectral clustering implementation for distributed machine learning
Language: Python - Size: 82 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
UsefulEngines/Portfolio
Reference Info
Size: 1.32 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
valinsogna/2021Assignement02
Parallel implementation of kd-tree construction using MPI & OpenMP. Features include efficient data point generation, tree visualization, scalability tests, and performance optimizations. Aims to address challenges like false sharing & workload imbalances.
Language: HTML - Size: 1.32 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
real-space/.github
Profile of Real-Space DFT Developments at Jülich Supercomputing Centre
Size: 157 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
ginolhac/tutorials Fork of ULHPC/tutorials
Tutorials for the usage of the UL HPC platform
Language: HTML - Size: 309 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
TheJacksonLaboratory/intro-to-hpc
An introduction to HPC
Language: HTML - Size: 2.27 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
PS-O5/HPC_Applications
These are few HPC implementation codes/snippets which I am sharing with permission to share them. You can use them if you want. :)
Language: C++ - Size: 64.5 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
neudinger/equadiffMPI
Distributed diffusion equation C/C++ OpenMP one-sided communication MPI
Language: C++ - Size: 15.6 KB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
minirookie/Preprocess_and_Quantitate_RNA_sequences
Pipelines for whole-cell RNA sequencing data preprocessing, QC, transcriptome mapping and gene expression quantification.
Language: Shell - Size: 95.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
minirookie/Structure_Data_Processing_Pipeline
Script Python and HPC commands in Shell to run pipeline and process research (crystallographic) data
Language: Shell - Size: 37.1 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
albeertito7/High-Performance-Computing
Activities of the subject "High Performance Computing" of the University of Lleida Master's degree in Informatics Engineering
Language: C - Size: 2.22 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
LeoUribC/Evaluacion2_HPC_LeandroUribe
In this repository will be stored the solution to the problems stated at the HPC's practical exam # 2
Language: C - Size: 21.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Lancasterg/HPC-stencil-serial-mpi-openmp
Stencil algorithm improved using mpi and openmp
Language: C - Size: 930 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
VeVeBoi/MergeSortMPI
Making a merge sort algorithm using MPI
Language: Shell - Size: 146 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
RIKEN-LQCD/jacobi2d
Test program for double buffering communication with utofu for stencil application
Language: C - Size: 69.3 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
NucciTheBoss/jespipe
Jespipe: A Plugin-Based, Open MPI Framework for Adversarial Machine Learning Analysis.
Language: Python - Size: 1.54 MB - Last synced at: 7 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
nordine-marie/hpc-dna-approximate-pattern-matching
High Performance Computing : DNA Approximate Pattern Matching (APM)
Language: Jupyter Notebook - Size: 5.58 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
okhoshaba/HPCResearching
HPCResearching - A Software Environment for High-Performance Computing research and development.
Language: Java - Size: 153 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
jose-d/ceico-easyconfigs
Easyconfigs not ready for upstream .. or ugly enough.. :)
Language: Shell - Size: 154 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
prehensilecode/mpibpc-gromacs-bench-utils
Shell scripts to run and extract output from GROMACS benchmarks.
Language: Shell - Size: 35.2 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
PSU-ICDS/bulksubmit
Bulk submit jobs on HPC systems using the TorquePBS job scheduler.
Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
GoHypernet/Galileo-AmberTools-Framework
Repository for AmberTools Mission framework type in Galileo.
Language: Dockerfile - Size: 373 KB - Last synced at: 9 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
LiamBindle/batch_exec
A utility for batch executions with MPI
Language: C - Size: 19.5 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
kirands16/academicpages Fork of academicpages/academicpages.github.io
I am Researcher in the machine learning for scientific applications such as earth sciences challenges.
Language: JavaScript - Size: 49.1 MB - Last synced at: 20 days ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
Kamesh-K/Monte-CarloSimulation-For-Options-Pricing
Codes of the HPC Project are added here.
Language: Python - Size: 899 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2
NOAA-EMC/containers
Container recipes for applications at NOAA
Language: Shell - Size: 31.3 KB - Last synced at: 12 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 5
GregaVrbancic/homebrew-hpc
Homebrew tap for HPC software
Language: Ruby - Size: 18.6 KB - Last synced at: 4 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
howlettjames/Advanced-Computing-Systems-Programming
This repository contains practices and projects related to the subject Advanced Computing Systems Programming at ESCOM - IPN.
Language: C - Size: 14.3 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
Kamesh-K/High-Performance-Computing
This repository consists of classwork and homework of the course High-Performance Computing offered at IIT Madras.
Language: Jupyter Notebook - Size: 2.94 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
jayrbolton/hadrosaur
File management for batch compute work
Language: Python - Size: 56.6 KB - Last synced at: 28 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
dvsingh9/slurm-api Fork of UFResearchComputing/slurm-api
A RESTful interface to SLURM
Size: 43 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
dgFemtoLab/eduhipc2019
Repository for teaching materials and tools.
Language: TeX - Size: 963 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
CBDatCMU/slurm-examples
Just sample scripts that show you how to use SLURM
Language: Shell - Size: 1000 Bytes - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
xiamr/pbs
Cluster task management system for HPC
Language: Python - Size: 21.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
cyverseuk/Cufflinks
Language: Shell - Size: 14.6 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
saschagottfried/fds Fork of firemodels/fds
Fire Dynamics Simulator
Language: Fortran - Size: 175 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
cyverseuk/kallisto
Language: Shell - Size: 16.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
thempatel/functional_genomics_tools
Functional genomics tools
Language: Python - Size: 376 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
cyverseuk/mikado
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
Language: Shell - Size: 30.3 KB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
mohamso/optewe
A repository that contains the source code for a seismic wave simulator, autotuning scripts, and a corresponding post-processing tool for finding better system configurations
Language: C++ - Size: 45 MB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 2
DrSnowbird/docker-hpc-gamess-ubuntu
docker-hpc-gamess-ubuntu
Language: Shell - Size: 35.2 KB - Last synced at: 4 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
cyverseuk/blast
blast docker image and cyverse integration
Language: Shell - Size: 22.5 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
cyverseuk/polymarker
Dockerized Agave app for Polymarker, a SNP assay development pipeline
Language: Shell - Size: 13.7 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
cyverseuk/cut_columns
Language: Shell - Size: 3.91 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
cyverseuk/cyverseuk-util
A collection of scripts for the cyverse UK clusters
Language: Python - Size: 14.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
cyverseuk/GWASSER
Dockerized Agave app for GWASSER, an R script for simple gwassing.
Language: R - Size: 38.1 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
cyverseuk/samtools
Language: Shell - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/sickle
Language: Shell - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/bedtools
Language: Shell - Size: 11.7 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1
TRex22/dave-A-2048-AI
dave A 2048 AI to work on a high performance computing cluster using CUDA and MPI
Language: C - Size: 9.07 MB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/MUSCLE
Language: Shell - Size: 3.91 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1
cyverseuk/btrim
Language: Shell - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/ontologizer
Language: Shell - Size: 5.86 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/Bowtie2
Language: Shell - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/Trimmomatic
docker image and Agave app for Trimmomatic software
Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/cutadapt
Language: Shell - Size: 7.81 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
robertBrnnn/dgrid
Docker task execution for existing schedulers/resource managers. Allowing users to run multiple images/containers in parallel as a task submitted to their cluster
Language: Python - Size: 169 KB - Last synced at: 8 months ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/uncompress_gunzip
Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/concatenate_files
Language: Shell - Size: 3.91 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
cyverseuk/RAxML
RAxML agave app and docker image
Language: Shell - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
cyverseuk/beast2
Beast 2 agave & docker package
Language: Shell - Size: 13.7 KB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
cyverseuk/portcullis
portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis
Language: Shell - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
cyverseuk/mrbayes
MrBayes app w/docker & mpi
Language: Shell - Size: 11.7 KB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
cyverseuk/tuxedo
Tuxedo suite for up to 4 conditions
Language: Python - Size: 24.4 KB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0