jonescompneurolab/hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates

Language: Python - Size: 167 MB - Last synced at: 4 days ago - Pushed at: 23 days ago - Stars: 59 - Forks: 67

BlueBrain/nmodl

Code Generation Framework For NEURON MODeling Language

Language: C++ - Size: 144 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 55 - Forks: 15

sg-s/xolotl

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

Language: C++ - Size: 20.6 MB - Last synced at: 13 days ago - Pushed at: about 2 years ago - Stars: 46 - Forks: 8

neuronsimulator/pythontutorial 📦

This is now in the docs folder of the main NEURON repository. Make all changes there.

Language: Jupyter Notebook - Size: 1.85 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 4

JustasB/OlfactoryBulb

Biophysically Realistic Model of the Olfactory Bulb Mitral-Tufted-Granule Cell Pathway

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ziemowit-s/neuronpp

Neuron++ is a library which wraps NEURON (http://www.neuron.yale.edu) with easy to use Python objects.

Language: AGS Script - Size: 6.48 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 3

ortanaV2/Neuron-Formation-Simulator

Simple Neuron Formation Simulation with Thresholds and Settings. Feature Update: Neuronal Interaction Data

Language: Python - Size: 146 KB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 7 - Forks: 1

Axelwickm/NeuroCorrelation

3D Spiking neural network simulation exploring Spike Timing Dependent Plasticity (STDP)

Language: C++ - Size: 1.63 MB - Last synced at: 9 months ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 1

marderlab/xolotl-paper

Paper describing the xolotl neuron and network simulator. Includes Latex source and MATLAB code to reproduce every figure in the paper.

Language: TeX - Size: 20.9 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 4 - Forks: 0

max-talanov/bypass

the bypass project repository

Language: Jupyter Notebook - Size: 85.4 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 3 - Forks: 3

nuniz/CoincidenceDetectionNetwork

Analytical derivation of the stochastic output of coincidence detection (CD) neurons

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ModelDBRepository/266864

Multiplexed coding in Purkinje neuron dendrites (Zang and De Schutter 2021)

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Poirazi-Lab/DendroTweaks

Python toolbox for creating and validating single-cell neuronal models with active dendrites.

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amshenoy/hodgkin-huxley-playground

Modelling Hodgkin-Huxley neural response with dynamic input

Language: JavaScript - Size: 33.2 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

ModelDBRepository/8115

Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001)

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Minato0859/NeuroHack-2024

This interactive and educational game introduces kids to the complexities of neuroscience through mixed-reality gameplay. Players embark on a journey as a microglia cell, navigating through the brain to protect neurons from viruses, showcasing the importance of various cell types in brain function. The game combines fun with learning.

Language: C# - Size: 113 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

ModelDBRepository/279

Low Threshold Calcium Currents in TC cells (Destexhe et al 1998)

Language: GLSL - Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ModelDBRepository/267499

A focal seizure model with ion concentration changes (Gentiletti et al., accepted)

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ModelDBRepository/265584

Cerebellar granule cell (Masoli et al 2020)

Language: AMPL - Size: 104 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ModelDBRepository/195615

Computer models of corticospinal neurons replicate in vitro dynamics (Neymotin et al. 2017)

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ModelDBRepository/186768

CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)

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ModelDBRepository/184054

CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)

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ModelDBRepository/155602

Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)

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ModelDBRepository/153196

Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)

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ModelDBRepository/151404

Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)

Language: Python - Size: 83 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ModelDBRepository/123815

Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)

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ModelDBRepository/39948

Artificial neuron model (Izhikevich 2003, 2004, 2007)

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ModelDBRepository/35358

CA3 pyramidal cell: rhythmogenesis in a reduced Traub model (Pinsky, Rinzel 1994)

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SwaggerNiels/BlenderSpiky Fork of ArtemKirsanov/BlenderSpike

A Blender addon for visualizing your NEURON model, with customizable voltage traces.

Language: Python - Size: 156 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

ziemowit-s/neuronpp_gym

Spiking Neural Gym agent created on top of NEURON++ and OpenAI Gym libraries

Language: AGS Script - Size: 2.09 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

jajcayn/interactive-spiking-neuron-model

Interactive spiking neuron models

Language: Python - Size: 299 KB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

dkrawciw/CanardExplosionResearch_CompNeuroScience_CSM

We are researching Canard Explosions in our Computational Neuroscience class at the Colorado School of Mines. This Repository contains tests and functions for our results.

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QabasAK/HH-Modeling

A Python simulation of action potential generation using the Hodgkin-Huxley model, capturing voltage-dependent ion channel dynamics and membrane potential changes in response to current injection.

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Rainman-23/lif-qif-eif-gain-function

A python script to plot gain curves (f-i curves) of LIF, QIF and EIF neurons at different current stimulation values using Brian2

Language: Python - Size: 3.91 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

ModelDBRepository/232097

2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)

Language: NMODL - Size: 68.4 KB - Last synced at: 19 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 2

antoniosdougalis/Human_Cortical_Neurons_Education-Research

Education&Research Neuromorhologically reconstructed Human Cortical Neuron with selective synaptic and ionic mechanisms

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Cub0n/Gneu

Language: Java - Size: 54.7 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

gomzi-star/siz

Language: Jupyter Notebook - Size: 1.14 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

BryWillow/neuwillow

NeuWillow is a Machine-Learning based Neuroscience modeling platform. It's highly configurable, from dendrite-receptors, ion channels, action potentials, and axons. You can test the neural network using 1-to-n neurons. It can learn based on many existing models, e.g. Hodgkin-Huxley, or you can create your own. It can run on any operating system.

Language: C++ - Size: 7.14 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

sourceduty/Neuroscience

🧠 Artificial neuroscience and neuroscience problems.

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ModelDBRepository/2014821

Myelin dystrophy in the aging prefrontal cortex leads to impaired signal transmission and working memory in a multiscale model of the aging prefrontal cortex (Ibañez, Sengupta et al., accepted)

Language: Python - Size: 9.53 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

OSPOKS/neuro-noise

just an live background for websites

Language: JavaScript - Size: 14.6 KB - Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

CSteinhardt153/pulsatile-prediction-code

Code for the paper "Pulsatile electrical stimulation disrupts neural firing in predictable, correctable ways." Contains code for vestibular afferent simulation experiments under different paradigms, pulse rate-firing rate relationship fitting equations and code, and figure plotting code used for manuscript.

Language: MATLAB - Size: 83.2 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

ModelDBRepository/2016666

Electrical properties of dendritic spines (Popovic et al. 2015)

Language: AMPL - Size: 563 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

ssapir/NeuronQuickStart

A wrapper to common functionality to work with Neuron package (https://www.neuron.yale.edu/neuron/)

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ModelDBRepository/53965

T channel currents (Vitko et al 2005)

Language: GLSL - Size: 146 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

ModelDBRepository/51196

LTP in cerebellar mossy fiber-granule cell synapses (Saftenku 2002)

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ModelDBRepository/50207

Kinetic NMDA receptor model (Kampa et al 2004)

Language: AMPL - Size: 5.86 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 3

ModelDBRepository/22203

Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007)

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ModelDBRepository/7485

CA1 Pyramidal Neuron: Synaptic Scaling (London, Segev 2001)

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ModelDBRepository/7400

Hippocampus temporo-septal engram shift model (Lytton 1999)

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ModelDBRepository/50219

Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998)

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ModelDBRepository/267694

Human and mouse Purkinje cell models (Masoli et al., 2024)

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ModelDBRepository/2014816

Different responses of mice and rats hippocampus CA1 pyramidal neurons to in vitro and in vivo-like inputs (Vitale et al., 2023)

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ModelDBRepository/267599

Cholinergic Modulation Shifts the Response of CA1 Pyramidal Cells to Depolarizing Ramps via TRPM4 Channels with Potential Implications for Place Cell Firing (Combe et al., 2023)

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ModelDBRepository/267661

DRG nociceptors from wild-type and Fhf2-KO mice. Fhf2 gene knockout blocks heat nociception. (Marra et al., 2023)

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ModelDBRepository/2001735

Estimating the effects of slicing on the electrophysiological properties of spinal motoneurons under normal and disease conditions (Mousa and Elbasiouny 2021)

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ModelDBRepository/267738

A computational model for fast skeletal muscle (Kim and Heckman, accepted)

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ModelDBRepository/267691

Stoney vs Histed: Quantifying spatial effects of intracortical microstims (Kumaravelu et al 2022)

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ModelDBRepository/267666

A model of ASIC1a and synaptic cleft pH modulating wind-up in wide dynamic range neurons (Delrocq)

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ModelDBRepository/267646

Biophysically Realistic Network Model of the Wild-Type and Degenerate Retina (Ly et al 2022)

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ModelDBRepository/267610

Heterogeneous axon model (Zang et al, accepted)

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ModelDBRepository/267594

LGMD - ON excitation to dendritic field C

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ModelDBRepository/267587

Human L5 Cortical Circuit (Guet-McCreight)

Language: Python - Size: 9.26 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/267509

Cell-type specific integration of feedforward and feedback synaptic inputs (Ridner et al, accepted)

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ModelDBRepository/267391

A 3D population model of midget retinal ganglion cells at the human fovea (Italiano et al, 2022)

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ModelDBRepository/267384

NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015)

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ModelDBRepository/267311

Depolarization Enhacement of Dendritic Spike Propagation (Bock et al 2022)

Language: Python - Size: 91.8 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/267201

eLIF and mAdExp: energy-based integrate-and-fire neurons (Fardet and Levina 2020)

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ModelDBRepository/267189

Computational model of cerebellar tDCS (Zhang et al., 2021)

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ModelDBRepository/267176

Spinal motoneuron recruitment regulated by ionic channels during fictive locomotion (Zhang & Dai 20)

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ModelDBRepository/267142

Spatial constrains of GABAergic rheobase shift (Lombardi et al., 2021)

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ModelDBRepository/267106

DG adult-born granule cell: nonlinear a5-GABAARs control AP firing (Lodge et al, 2021)

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ModelDBRepository/267103

Look-Up Table Synapse (LUTsyn) models for AMPA and NMDA (Pham et al., 2021)

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ModelDBRepository/267056

Spinal Dorsal Horn Network Model (Medlock et al 2022)

Language: Python - Size: 62.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/267018

Efficient simulation of 3D reaction-diffusion in models of neurons (McDougal et al, 2022)

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ModelDBRepository/267013

Cellular and Synaptic Mechanisms Differentiate Mitral & Superficial Tufted Cells (Jones et al 2020)

Language: Python - Size: 20.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/267009

Diameter, Myelination and Na/K pump interactions affect axonal resilience to high frequency spiking

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ModelDBRepository/266984

Human Cortical L5 Pyramidal Cell (Rich et al. 2021)

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ModelDBRepository/266925

Ambient glutamate shapes AMPA receptor responses to simulated transients (Balmer et al. 2021)

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ModelDBRepository/266905

CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991)

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ModelDBRepository/266901

Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21)

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ModelDBRepository/266881

A neurite to measure ePSP and AP amplitude after passive spread (DeMaegd & Stein, 2021)

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ModelDBRepository/266872

Potjans-Diesmann cortical microcircuit model in NetPyNE (Romaro et al 2021)

Language: Python - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266871

Sound-evoked activity in peripheral axons of type I spiral ganglion neurons (Budak et al. 2021)

Language: MATLAB - Size: 27.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266851

Dendritic Impedance in Neocortical L5 PT neurons (Kelley et al. 2021)

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ModelDBRepository/266850

A model for a nociceptor terminal and terminal tree (Barkai et al., 2020)

Language: AMPL - Size: 138 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266842

A cerebellar model of phase-locked tACS for essential tremor (Schreglmann et al., 2021)

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ModelDBRepository/266818

FHF2KO and Wild-Type Mouse Cardiomyocyte Strands (Park et al 2020)

Language: AMPL - Size: 711 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266814

Maximal firing rate in midbrain dopamine neurons (Knowlton et al., accepted)

Language: Python - Size: 32.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266802

NMDA receptors enhance the fidelity of synaptic integration (Li and Gulledge 2021)

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ModelDBRepository/266799

Purkinje neuron network (Zang et al. 2020)

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ModelDBRepository/266782

Modeling a Nociceptive Neuro-Immune Synapse Activated by ATP and 5-HT in Meninges (Suleimanova et al., 2020)

Language: AMPL - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/266775

Library of biophysically detailed striatal projection neurons (Lindroos and Hellgren Kotaleski 2020)

Language: AMPL - Size: 158 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

ModelDBRepository/266732

A model of closed-loop motor unit including muscle spindle feedback (Kim, 2020)

Language: AMPL - Size: 166 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/263988

Model of peripheral nerve with ephaptic coupling (Capllonch-Juan & Sepulveda 2020)

Language: Python - Size: 3.87 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/262115

NN activity impact on neocortical pyr. neurons integrative properties in vivo (Destexhe & Pare 1999)

Language: GLSL - Size: 86.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ModelDBRepository/260972

Temperature sensitive axon models (DeMaegd & Stein 2020)

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ModelDBRepository/260971

Biochemically detailed model of LTP and LTD in a cortical spine (Maki-Marttunen et al 2020)

Language: Python - Size: 16.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

ModelDBRepository/260967

Double cable myelinated axon (Layer 5 pyramidal neuron; Cohen et al 2020)

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