Topic: "pdb-parser"
horsicq/PDBRipper
PDBRipper is a utility for extract an information from PDB-files.
Language: C - Size: 1.76 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 828 - Forks: 90
HoShiMin/formatPE
A bunch of parsers for PE and PDB formats in C++
Language: C++ - Size: 81.1 KB - Last synced at: 17 days ago - Pushed at: 11 months ago - Stars: 237 - Forks: 49
zouxianyu/query-pdb
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
Language: C++ - Size: 23.4 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 136 - Forks: 43
douweschulte/pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
Language: Rust - Size: 17.8 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 59 - Forks: 20
Pranavkhade/PACKMAN
Python package built around protein structure and dynamics. OpenBabel-inspired objects.
Language: Python - Size: 12.3 MB - Last synced at: 6 days ago - Pushed at: 10 months ago - Stars: 36 - Forks: 7
smx-smx/PDBSharp
Fast and cross-platform parser for Microsoft PDB files
Language: C# - Size: 731 KB - Last synced at: 10 days ago - Pushed at: 6 months ago - Stars: 33 - Forks: 4
a-r-j/CPDB
Cython implementation of PDB -> DataFrame parsing
Language: Cython - Size: 18.7 MB - Last synced at: 18 days ago - Pushed at: almost 2 years ago - Stars: 23 - Forks: 0
BioHaskell/hPDB
PDB parser in Haskell
Language: Haskell - Size: 206 KB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 21 - Forks: 7
Ruibin-Liu/MolDF
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.
Language: Python - Size: 2.37 MB - Last synced at: 13 days ago - Pushed at: 23 days ago - Stars: 8 - Forks: 2
OmerRaviv/PdbBenchmarks
Benchmark for the most popular managed PDB readers.
Language: C# - Size: 1.09 MB - Last synced at: 25 days ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 0
LixiangZhao98/ProteinVisualization
This is a Protein Visualization demo project built with Unity3D. It reads and visualizes .pdb files. The current visualizations includes space-filling, balls-and-sticks, licorice and backbone diagrams, and...the seamless transition between these diagrams. The repository is keeping to update.
Language: C# - Size: 121 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
Jaffar-Hussein/Python-PDB-Parser-and-Analysis
A Python-based parser and analysis tool for Protein Data Bank (PDB) files. The project aims to facilitate the manipulation of PDB files, enabling users to extract and compute various structural properties of proteins, such as counting amino acid residues and calculating distances between atoms.
Language: Python - Size: 4.19 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
allbegray/pdb-parser-js
Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
Language: TypeScript - Size: 3.21 MB - Last synced at: 14 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
oleander-twig/protein-databank-filtering
My summer practice at the HSE university
Language: Jupyter Notebook - Size: 6.84 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Michal-Szczygiel/pdb_parser
Prosty parser plików .pdb napisany jako natywne rozszerzenie pythonowe.
Language: Rust - Size: 158 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
Michal-Szczygiel/pdb_utility
Użyteczności związane z parsowaniem plików .pdb oraz zdalnym dostępem do baz danych Pfam i UniProt.
Language: Python - Size: 254 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
richard-hgs/c-infinity-utilities
C++ Utilities, DLL for GUI, Layout Managers, PDB Symbol Parser, Input(Mouse double click in less than 100ms fix), Raw disk data writer, And much more.
Language: C - Size: 16.3 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
c-feldmann/pdbpython
The scope of this module is downloading or reading PDB-Files and subsequently parsing them
Language: Python - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
Krnds/ProjetPDB
Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
Language: Java - Size: 14.3 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
hamalcij/biotool
Bioinformatics Toolbox
Language: C++ - Size: 406 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
AndreaRubbi/pdb_parser
Python program that can identify the residues interacting between chains of a complex protein.
Language: Python - Size: 14.6 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
Tejas1415/PDB-Protein-Structure-Prediction
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
Language: Python - Size: 4.58 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 2
zwang123/pdblib
A simple Python library to easily parse pdb files
Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
