Topic: "pdb"
icsharpcode/ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
Language: C# - Size: 41.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 22,973 - Forks: 3,471
inducer/pudb
Full-screen console debugger for Python
Language: Python - Size: 2.12 MB - Last synced at: 3 days ago - Pushed at: 7 days ago - Stars: 3,080 - Forks: 233
pdbpp/pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
Language: Python - Size: 1.35 MB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 1,356 - Forks: 70
crosire/blink
A tool which allows you to edit source code of any MSVC C++ project live at runtime
Language: C++ - Size: 181 KB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 1,142 - Forks: 86
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Language: Python - Size: 913 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1,021 - Forks: 99
plasma-umass/ChatDBG
ChatDBG - AI-assisted debugging. Uses AI to answer 'why'
Language: Python - Size: 39.6 MB - Last synced at: 1 day ago - Pushed at: 29 days ago - Stars: 956 - Forks: 59
ajkhoury/ReClassEx
ReClassEx
Language: C++ - Size: 186 MB - Last synced at: 8 days ago - Pushed at: almost 4 years ago - Stars: 901 - Forks: 180
spiside/pdb-tutorial
A simple tutorial about effectively using pdb
Language: Python - Size: 83 KB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 864 - Forks: 102
horsicq/PDBRipper
PDBRipper is a utility for extract an information from PDB-files.
Language: C - Size: 1.77 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 837 - Forks: 91
sakhnik/nvim-gdb
Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB
Language: Lua - Size: 1.28 MB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 749 - Forks: 41
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
Language: Python - Size: 22.3 MB - Last synced at: 7 days ago - Pushed at: 10 months ago - Stars: 728 - Forks: 120
mdtraj/mdtraj
An open library for the analysis of molecular dynamics trajectories
Language: Python - Size: 34.7 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 640 - Forks: 288
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Language: Java - Size: 48.8 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 606 - Forks: 391
Mixaill/FakePDB
Tool for PDB generation from IDA Pro database
Language: C++ - Size: 550 KB - Last synced at: 1 day ago - Pushed at: 7 months ago - Stars: 587 - Forks: 77
charnley/rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Language: Python - Size: 568 KB - Last synced at: 4 days ago - Pushed at: 5 months ago - Stars: 533 - Forks: 121
pharmai/plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to π Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Language: Python - Size: 8.98 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 525 - Forks: 116
getsentry/pdb
A parser for Microsoft PDB (Program Database) debugging information
Language: Rust - Size: 1.5 MB - Last synced at: 9 days ago - Pushed at: 6 months ago - Stars: 417 - Forks: 73
haddocking/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
Language: Python - Size: 952 KB - Last synced at: 3 days ago - Pushed at: 9 months ago - Stars: 412 - Forks: 114
cansarigol/pdbr
pdb + Rich library
Language: Python - Size: 1.89 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 347 - Forks: 14
ergrelet/windiff
Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.
Language: Rust - Size: 1020 KB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 344 - Forks: 18
rdk/p2rank
P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
Language: Groovy - Size: 675 MB - Last synced at: 1 day ago - Pushed at: about 2 months ago - Stars: 327 - Forks: 42
williamgilpin/pypdb
A Python API for the RCSB Protein Data Bank (PDB)
Language: Python - Size: 580 KB - Last synced at: 10 days ago - Pushed at: 10 months ago - Stars: 326 - Forks: 77
ergrelet/resym
Cross-platform tool that allows browsing and extracting C and C++ type declarations from PDB files.
Language: Rust - Size: 4.89 MB - Last synced at: 13 days ago - Pushed at: 4 months ago - Stars: 314 - Forks: 24
ionelmc/python-remote-pdb
Remote vanilla PDB (over TCP sockets).
Language: Python - Size: 103 KB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 291 - Forks: 29
kmaork/madbg
A fully-featured remote and preemptive debugger for python
Language: Python - Size: 164 KB - Last synced at: 8 days ago - Pushed at: 9 months ago - Stars: 285 - Forks: 9
bioSyntax/bioSyntax
Syntax highlighting for computational biology
Language: Shell - Size: 2.53 MB - Last synced at: 12 days ago - Pushed at: about 2 years ago - Stars: 265 - Forks: 30
jasonwhite/ducible π¦
A tool to make Windows builds reproducible. (UNMAINTAINED)
Language: C - Size: 309 KB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 257 - Forks: 24
HoShiMin/formatPE
A bunch of parsers for PE and PDB formats in C++
Language: C++ - Size: 81.1 KB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 245 - Forks: 50
gotcha/vimpdb
Pdb and Vim integration
Language: Python - Size: 168 KB - Last synced at: 12 days ago - Pushed at: over 8 years ago - Stars: 203 - Forks: 21
PDB-REDO/dssp
Application to assign secondary structure to proteins
Language: C++ - Size: 1.47 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 200 - Forks: 21
nblock/pdb-cheatsheet
A cheatsheet for the Python Debugger (pdb)
Language: TeX - Size: 797 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 196 - Forks: 20
mmagnus/rna-tools
π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Language: Jupyter Notebook - Size: 114 MB - Last synced at: 21 days ago - Pushed at: 2 months ago - Stars: 174 - Forks: 43
zouxianyu/query-pdb
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
Language: C++ - Size: 23.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 136 - Forks: 43
p0dalirius/pyPDBdownload
A Python script to download PDB files associated with a Portable Executable (PE)
Language: Python - Size: 115 KB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 121 - Forks: 12
LucaAngioloni/ProteinSecondaryStructure-CNN
Protein Secondary Structure predictor using Convolutional Neural Networks
Language: Python - Size: 44 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 113 - Forks: 31
Holzhaus/rekordcrate
Library for parsing Pioneer Rekordbox device exports
Language: Rust - Size: 7.73 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 112 - Forks: 17
molstar/VSCoding-Sequence
VSCode Extension for interactively visualising protein structure data in the editor
Language: TypeScript - Size: 99.5 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 108 - Forks: 10
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Language: Julia - Size: 11.4 MB - Last synced at: about 14 hours ago - Pushed at: 2 days ago - Stars: 100 - Forks: 24
mittinatten/freesasa
C-library for calculating Solvent Accessible Surface Areas
Language: C - Size: 6.74 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 99 - Forks: 37
mdmintz/pdbp
pdbp (Pdb+): A drop-in replacement for pdb and pdbpp. To replace "pdb", add "import pdbp" to an "__init__.py" file.
Language: Python - Size: 85 KB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 90 - Forks: 3
jvalcher/termfu
Multi-language TUI debugger with custom layouts
Language: C - Size: 8.5 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 88 - Forks: 3
khavernathy/mcmd
Monte Carlo and Molecular Dynamics Simulation Package
Language: C++ - Size: 20.5 MB - Last synced at: 8 days ago - Pushed at: 11 months ago - Stars: 86 - Forks: 19
Air14/SymbolicAccess
Static user/kernel mode library that allows access to all functions and global variables by extracting offsets from the PDB
Language: C++ - Size: 21.1 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 85 - Forks: 17
camden-smallwood/pdb-decompiler
A tool to decompile MSVC PDB files to C++ source code.
Language: Rust - Size: 124 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 85 - Forks: 6
cifkao/nopdb
NoPdb: Non-interactive Python Debugger
Language: Python - Size: 4.21 MB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 83 - Forks: 2
dmaivel/ntoseye
Windows kernel debugger for Linux hosts running Windows under KVM/QEMU
Language: C++ - Size: 101 KB - Last synced at: 12 days ago - Pushed at: 21 days ago - Stars: 81 - Forks: 12
diegozea/MIToS.jl
A Julia package to analyze protein sequences, structures, and evolutionary information
Language: Julia - Size: 57.2 MB - Last synced at: 7 days ago - Pushed at: 10 days ago - Stars: 77 - Forks: 17
MooersLab/pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
Language: Python - Size: 29.1 MB - Last synced at: 24 days ago - Pushed at: about 1 year ago - Stars: 76 - Forks: 16
Biswa96/PDBDownloader
Standalone program to download PDB Symbol files for debugging without WDK
Language: C - Size: 28.3 KB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 75 - Forks: 25
dotnet/symreader-converter
Converts between Windows PDB and Portable PDB formats.
Language: C# - Size: 1.85 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 65 - Forks: 38
therealdreg/ida_vmware_windows_gdb
Helper script for Windows kernel debugging with IDA Pro on VMware + GDB stub (including PDB symbols)
Language: Python - Size: 185 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 63 - Forks: 13
therealdreg/ida_bochs_windows
Helper script for Windows kernel debugging with IDA Pro on native Bochs debugger (including PDB symbols)
Language: Python - Size: 524 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 62 - Forks: 10
douweschulte/pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
Language: Rust - Size: 17.8 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 60 - Forks: 20
parulnith/10-Simple-hacks-to-speed-up-your-Data-Analysis-in-Python
Some useful Tips and Tricks to speed up the data analysis process in Python.
Size: 29.3 KB - Last synced at: 12 months ago - Pushed at: almost 6 years ago - Stars: 60 - Forks: 17
coddingtonbear/ircpdb
Remotely and collaboratively debug your Python application via an IRC channel.
Language: Python - Size: 81.1 KB - Last synced at: 16 days ago - Pushed at: almost 9 years ago - Stars: 59 - Forks: 3
wronglink/pytest-pudb
Pytest PuDB debugger integration
Language: Python - Size: 30.3 KB - Last synced at: 19 days ago - Pushed at: almost 2 years ago - Stars: 58 - Forks: 6
arvindshmicrosoft/SQLCallStackResolver
Supporting files for the main SQLCallStackResolver sample tool (https://aka.ms/SQLStack)
Size: 24.1 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 57 - Forks: 10
UCLOrengoGroup/cath-tools
Protein structure comparison tools such as SSAP and SNAP
Language: C++ - Size: 18.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 14
sarisabban/RamaNet
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Language: Python - Size: 1.66 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 50 - Forks: 10
nvelden/NGLVieweR
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
Language: R - Size: 24.4 MB - Last synced at: 12 days ago - Pushed at: 6 months ago - Stars: 49 - Forks: 4
microsoft/SQLCallStackResolver
A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.
Language: C# - Size: 11.8 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 47 - Forks: 14
libretro/Mu Fork of meepingsnesroms/Mu
A new Palm OS emulator targeting compatibility, speed, and accuracy in that order. This is dedicated to Emily, the developer of Mu, who passed away in 2020. May you rest well.
Language: C - Size: 27.9 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 43 - Forks: 15
benmezger/pydebug π¦
Decorators for debugging Python
Language: Python - Size: 24.4 KB - Last synced at: 10 days ago - Pushed at: almost 6 years ago - Stars: 42 - Forks: 3
wandel/pdbgen
Generating PDB from Ghidra
Language: C++ - Size: 321 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 41 - Forks: 3
ajkhoury/pdbfetch
Fetch PDB symbols directly from Microsoft's symbol servers
Language: Go - Size: 50.8 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 41 - Forks: 10
jgreener64/pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
Language: Python - Size: 1.93 MB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 41 - Forks: 6
GetRektBoy724/KPDB
Windows PDB parser for kernel-mode environment.
Language: C - Size: 15.6 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 37 - Forks: 14
jr-marchand/caviar
// PROJECT PAUSED FOR NOW (lack of capacity) // Protein cavity identification and automatic subpocket decomposition
Language: Python - Size: 26 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 36 - Forks: 10
quangnh89/DbgSymGrabber
Just another tool to download specify Symbol (.pdb) files
Language: C++ - Size: 807 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 36 - Forks: 11
mstange/pdb-addr2line
A Rust crate to symbolicate addresses from PDBs, like addr2line. Uses the `pdb` crate.
Language: Rust - Size: 2.33 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 35 - Forks: 5
gu1729/pdbdump
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
Language: C++ - Size: 317 KB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 8
mingrammer/pdb-tutorial Fork of spiside/pdb-tutorial
:book: pdb νν λ¦¬μΌ (https://github.com/spiside/pdb-tutorial νκ΅μ΄ λ²μ )
Language: Python - Size: 38.1 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 35 - Forks: 12
cusbg/MolArt
MOLeculAR structure annoTator
Language: JavaScript - Size: 58.5 MB - Last synced at: 15 days ago - Pushed at: 8 months ago - Stars: 34 - Forks: 8
ppillot/libmol
Single Page Web Application for displaying and studying molecular models
Language: Vue - Size: 83.5 MB - Last synced at: 26 days ago - Pushed at: 11 months ago - Stars: 31 - Forks: 4
avrabyt/st-speckmol
Streamlit Component for creating Speck molecular structures within Streamlit Web app.
Language: Python - Size: 74 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 31 - Forks: 15
ojasphansekar/Employee-Payroll-Management-System
Advanced Database Management System ( PL/SQL )
Size: 474 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 29 - Forks: 17
samirelanduk/molstar-react
Molstar as a react component
Language: JavaScript - Size: 50.8 KB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 27 - Forks: 8
andersmelander/map2pdb
map2pdb: A utility to generate pdb debug info for Delphi applications
Language: Pascal - Size: 374 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 26 - Forks: 4
gauge-sh/chatpdb
Chat with your Python debugger
Language: Python - Size: 666 KB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 26 - Forks: 2
sarisabban/RosettaDesign
RosettaDesign using PyRosetta
Language: Python - Size: 127 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 26 - Forks: 6
isaacbernat/docker-pudb
Debug Python code within a Docker container remotely from your terminal using pudb
Language: Python - Size: 8.79 KB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 25 - Forks: 1
wongfei/pdb-ripper
Extend dia2dump utility to generate cpp code from pdb
Language: C++ - Size: 2.9 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 25 - Forks: 13
matteoferla/MichelaNGLo-app
A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site
Language: Mako - Size: 107 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 25 - Forks: 4
SeanCline/PythonSymbols
A WinDbg symbol server for all recent versions of CPython.
Language: Python - Size: 2.46 GB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 24 - Forks: 0
pinwhell/MSPDBX
Lightweight PDB symbol parser and resolver
Language: C++ - Size: 9.77 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 24 - Forks: 1
MooersLab/jupyterlabpymolpysnips
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
Language: HTML - Size: 8.76 MB - Last synced at: 24 days ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 5
lightdock/lightdock-python2.7
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Language: C++ - Size: 64 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 24 - Forks: 9
JetBrains/teamcity-symbol-server
TeamCity Symbol Server plugin
Language: Java - Size: 8.87 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 23 - Forks: 20
a-r-j/CPDB
Cython implementation of PDB -> DataFrame parsing
Language: Cython - Size: 18.7 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 23 - Forks: 0
adyzng/GoSymbols
Windows PDB symbol server
Language: Go - Size: 301 KB - Last synced at: 12 months ago - Pushed at: over 7 years ago - Stars: 23 - Forks: 4
ihmwg/IHMCIF
π mmCIF support for hybrid/integrative models
Language: Shell - Size: 57.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 22 - Forks: 3
jschwinger233/pdbattach
Attach pdb to a running Python process.
Language: Python - Size: 40 KB - Last synced at: 4 days ago - Pushed at: almost 3 years ago - Stars: 22 - Forks: 0
diasurgical/devilution-comparer
Small helper tool to aid comparing functions between devilution and the original binary
Language: Rust - Size: 608 KB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 22 - Forks: 10
BioHaskell/hPDB
PDB parser in Haskell
Language: Haskell - Size: 206 KB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 21 - Forks: 7
liedllab/TopModel
A structure checker in python
Language: Python - Size: 1.5 MB - Last synced at: 27 days ago - Pushed at: 6 months ago - Stars: 20 - Forks: 5
therealdreg/symseghelper
Helper scripts for windows debugging with symbols for Bochs and IDA Pro (PDB files). Very handy for user mode <--> kernel mode
Language: Python - Size: 14.7 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 19 - Forks: 5
jdhao/dotfiles
Personal setting files for various tools
Language: Shell - Size: 416 KB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 17 - Forks: 2
P1tt1cus/FastSymApi
FastSymApi - A Fast API PDB Symbol Cache Server that efficiently caches and compresses PDBs on disk for quick and repeated retrieval.
Language: Python - Size: 23.4 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 17 - Forks: 1
sarisabban/Pose
A bare metal Python library for building and manipulating protein molecular structures
Language: Python - Size: 1.32 MB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 16 - Forks: 3
ababaian/bioSyntax-archive π¦
Syntax highlighting for computational biology
Language: Vim script - Size: 22.5 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 16 - Forks: 2
