An open API service providing repository metadata for many open source software ecosystems.

Topic: "computational-biology"

Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

Size: 807 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 68,749 - Forks: 9,291

gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

Language: Python - Size: 211 MB - Last synced at: 3 days ago - Pushed at: 28 days ago - Stars: 1,249 - Forks: 300

a-r-j/graphein

Protein Graph Library

Language: Jupyter Notebook - Size: 86.8 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 1,093 - Forks: 136

scikit-bio/scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Language: Python - Size: 26.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 937 - Forks: 275

opensim-org/opensim-core

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

Language: C++ - Size: 209 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 879 - Forks: 331

3dmol/3Dmol.js

WebGL accelerated JavaScript molecular graphics library

Language: Jupyter Notebook - Size: 917 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 861 - Forks: 208

biotite-dev/biotite

A comprehensive library for computational molecular biology

Language: Python - Size: 181 MB - Last synced at: 1 day ago - Pushed at: 10 days ago - Stars: 809 - Forks: 115

eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

Size: 379 KB - Last synced at: 25 days ago - Pushed at: 10 months ago - Stars: 803 - Forks: 83

BioPandas/biopandas

Working with molecular structures in pandas DataFrames

Language: Python - Size: 22.3 MB - Last synced at: 5 days ago - Pushed at: 10 months ago - Stars: 728 - Forks: 120

Mariewelt/OpenChem

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

Language: Python - Size: 162 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 703 - Forks: 116

bebop/poly

A Go package for engineering organisms.

Language: Go - Size: 11 MB - Last synced at: 7 days ago - Pushed at: 7 months ago - Stars: 701 - Forks: 72

seq-lang/seq πŸ“¦

A high-performance, Pythonic language for bioinformatics

Language: C++ - Size: 10.5 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 685 - Forks: 50

plotly/dash-cytoscape

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Language: Python - Size: 77 MB - Last synced at: 22 days ago - Pushed at: 2 months ago - Stars: 636 - Forks: 123

asoplata/open-computational-neuroscience-resources

A publicly-editable collection of open computational neuroscience resources

Size: 279 KB - Last synced at: 18 days ago - Pushed at: about 1 year ago - Stars: 602 - Forks: 91

opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

Language: Python - Size: 60.6 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 500 - Forks: 220

OmicsML/dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

Language: Python - Size: 17.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 360 - Forks: 38

MinkaiXu/GeoDiff

Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

Language: Python - Size: 2.19 MB - Last synced at: 4 days ago - Pushed at: about 2 years ago - Stars: 359 - Forks: 79

OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

Language: HTML - Size: 88.2 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 309 - Forks: 40

broadinstitute/Tangram

Spatial alignment of single cell transcriptomic data.

Language: Jupyter Notebook - Size: 141 MB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 298 - Forks: 57

HKU-BAL/Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Language: Python - Size: 3.48 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 277 - Forks: 31

bioSyntax/bioSyntax

Syntax highlighting for computational biology

Language: Shell - Size: 2.53 MB - Last synced at: 11 days ago - Pushed at: about 2 years ago - Stars: 265 - Forks: 30

AngelRuizMoreno/Jupyter_Dock

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Language: Jupyter Notebook - Size: 30.8 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 260 - Forks: 67

ucscGenomeBrowser/kent

UCSC Genome Browser source tree. Stable branch: "beta".

Language: C - Size: 569 MB - Last synced at: about 12 hours ago - Pushed at: about 13 hours ago - Stars: 236 - Forks: 93

aquaskyline/SOAPdenovo2

Next generation sequencing reads de novo assembler.

Language: C - Size: 2.1 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 232 - Forks: 77

franciscozorrilla/metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Language: Python - Size: 262 MB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 231 - Forks: 47

Benjamin-Lee/deep-rules

Ten Quick Tips for Deep Learning in Biology

Language: HTML - Size: 44.8 MB - Last synced at: 29 days ago - Pushed at: over 3 years ago - Stars: 226 - Forks: 45

BioinfoMachineLearning/bio-diffusion

A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)

Language: Python - Size: 48.1 MB - Last synced at: 15 days ago - Pushed at: 9 months ago - Stars: 202 - Forks: 27

camUrban/PteraSoftware

Ptera Software is a fast, easy-to-use, and open-source software package for analyzing flapping-wing flight.

Language: Python - Size: 183 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 195 - Forks: 40

sorgerlab/indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Language: Python - Size: 348 MB - Last synced at: 8 days ago - Pushed at: 18 days ago - Stars: 188 - Forks: 70

msmbuilder/vde

Variational Autoencoder for Dimensionality Reduction of Time-Series

Language: Jupyter Notebook - Size: 781 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 183 - Forks: 44

markovmodel/deeptime

Deep learning meets molecular dynamics.

Language: Jupyter Notebook - Size: 2.57 MB - Last synced at: 17 days ago - Pushed at: about 6 years ago - Stars: 178 - Forks: 40

LengerichLab/CompBioDatasetsForMachineLearning

A Curated List of Computational Biology Datasets Suitable for Machine Learning

Size: 43.9 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 171 - Forks: 25

aquaskyline/Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Language: Python - Size: 894 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 169 - Forks: 27

wheaton5/souporcell

Clustering scRNAseq by genotypes

Language: Python - Size: 1.66 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 168 - Forks: 46

pnpnpn/dna2vec

dna2vec: Consistent vector representations of variable-length k-mers

Language: Python - Size: 32 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 164 - Forks: 59

samsinai/FLEXS

Fitness landscape exploration sandbox for biological sequence design.

Language: Jupyter Notebook - Size: 174 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 163 - Forks: 22

BioinfoMachineLearning/PoseBench

Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)

Language: Jupyter Notebook - Size: 359 MB - Last synced at: 9 days ago - Pushed at: 2 months ago - Stars: 154 - Forks: 5

VerisimilitudeX/DNAnalyzer

Precision genomics for everyone, everywhere. Powered privately by AI.

Language: Java - Size: 191 MB - Last synced at: 3 days ago - Pushed at: 8 days ago - Stars: 148 - Forks: 63

Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

Language: Python - Size: 20.4 MB - Last synced at: 7 days ago - Pushed at: 9 days ago - Stars: 143 - Forks: 19

fbrundu/pymrmr

Python3 binding to mRMR Feature Selection algorithm (currently not maintained)

Language: C++ - Size: 208 KB - Last synced at: 16 days ago - Pushed at: 6 months ago - Stars: 140 - Forks: 37

theochem/iodata

Python library for reading, writing, and converting computational chemistry file formats and generating input files.

Language: Python - Size: 5.07 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 137 - Forks: 48

Chaste/Chaste

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Language: C++ - Size: 318 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 132 - Forks: 62

burkesquires/python_biologist

Python Programming for Biologists

Language: OpenEdge ABL - Size: 1.38 GB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 130 - Forks: 76

QizhiPei/FABind

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

Language: Python - Size: 1.17 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 124 - Forks: 17

OpenBioSim/biosimspace

An interoperable Python framework for biomolecular simulation.

Language: Python - Size: 39.1 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 113 - Forks: 18

phonchi/Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

Language: Jupyter Notebook - Size: 11.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 112 - Forks: 12

rcedgar/usearch12

Open-source usearch

Language: C++ - Size: 1.25 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 109 - Forks: 13

Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

Language: Python - Size: 1.68 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 106 - Forks: 5

HKU-BAL/Clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

Language: Python - Size: 1.01 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 102 - Forks: 12

RMeli/spyrmsd

πŸ“ Symmetry-corrected RMSD in Python

Language: Python - Size: 782 KB - Last synced at: 6 days ago - Pushed at: 23 days ago - Stars: 98 - Forks: 9

mrzResearchArena/PyFeat

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

Language: Python - Size: 5.5 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 95 - Forks: 30

jonathanking/protein-transformer

Predicting protein structure through sequence modeling

Language: Jupyter Notebook - Size: 59 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 91 - Forks: 20

swsoyee/r3dmol

🧬 An R package for visualizing molecular data in 3D

Language: JavaScript - Size: 31.4 MB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 90 - Forks: 5

jisungk/RIDDLE

Race and ethnicity Imputation from Disease history with Deep LEarning

Language: Python - Size: 12.2 MB - Last synced at: about 1 month ago - Pushed at: almost 7 years ago - Stars: 90 - Forks: 16

inoue0426/awesome-computational-biology

Awesome list of computational biology.

Size: 114 KB - Last synced at: 17 days ago - Pushed at: 6 months ago - Stars: 87 - Forks: 4

QizhiPei/BioT5

BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)

Language: Python - Size: 1.75 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 87 - Forks: 5

coleygroup/pyscreener

pythonic interface to virtual screening software

Language: Python - Size: 7.17 MB - Last synced at: 6 days ago - Pushed at: about 2 years ago - Stars: 87 - Forks: 34

YosefLab/Cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

Language: Python - Size: 46 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 86 - Forks: 28

chanzuckerberg/czid-web

Infectious Disease Sequencing Platform

Language: TypeScript - Size: 466 MB - Last synced at: 4 days ago - Pushed at: 10 days ago - Stars: 85 - Forks: 25

michellab/BioSimSpace

Code and resources for the EPSRC BioSimSpace project.

Language: Python - Size: 36.1 MB - Last synced at: 6 days ago - Pushed at: 7 months ago - Stars: 79 - Forks: 19

FangpingWan/NeoDTI

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

Language: Python - Size: 21.4 MB - Last synced at: 19 days ago - Pushed at: about 4 years ago - Stars: 77 - Forks: 32

montilab/hypeR

An R Package for Geneset Enrichment Workflows

Language: R - Size: 36.9 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 76 - Forks: 14

tanjimin/C.Origami

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

Language: Python - Size: 242 KB - Last synced at: 18 days ago - Pushed at: 11 months ago - Stars: 75 - Forks: 10

ketatam/DiffDock-PP

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

Language: Python - Size: 39.6 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 72 - Forks: 6

VarunUllanat/mint

Learning the language of protein-protein interactions

Language: Python - Size: 3.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 69 - Forks: 5

zetayue/MXMNet

Source code for "Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structures"

Language: Python - Size: 48.2 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 69 - Forks: 16

BALL-Project/ball

The Biochemical Algorithms Library

Language: C++ - Size: 152 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 69 - Forks: 31

proteinevolution/Toolkit

The MPI Bioinformatics Toolkit

Language: Scala - Size: 47.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 15

deweylab/CellO

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Language: Jupyter Notebook - Size: 21.9 MB - Last synced at: 5 days ago - Pushed at: almost 2 years ago - Stars: 65 - Forks: 15

BojarLab/glycowork

Package for processing and analyzing glycans and their role in biology.

Language: Jupyter Notebook - Size: 703 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 64 - Forks: 14

servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

Language: Makefile - Size: 540 KB - Last synced at: 22 days ago - Pushed at: 12 months ago - Stars: 62 - Forks: 3

Bohdan-Khomtchouk/shinyheatmap

Web application for enormous biological heatmaps

Language: R - Size: 1.75 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 62 - Forks: 24

modenaxe/msk-STAPLE

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

Language: MATLAB - Size: 139 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 60 - Forks: 17

earmingol/cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Language: Python - Size: 99.7 MB - Last synced at: 27 days ago - Pushed at: 12 months ago - Stars: 60 - Forks: 17

Data2Dynamics/d2d

a modeling environment tailored to parameter estimation in dynamical systems

Language: MATLAB - Size: 255 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 59 - Forks: 29

rcedgar/reseek

Protein structure alignment and search algorithm

Language: C++ - Size: 24.1 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 59 - Forks: 3

universal-automata/liblevenshtein-java

Various utilities regarding Levenshtein transducers. (Java)

Language: Java - Size: 5.83 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 57 - Forks: 20

aangelopoulos/im2im-uq

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Language: Python - Size: 5.24 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 56 - Forks: 10

cnapy-org/CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

Language: Python - Size: 6.78 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 54 - Forks: 8

XieResearchGroup/Physics-aware-Multiplex-GNN

Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"

Language: Python - Size: 1.43 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 54 - Forks: 10

poseidonchan/TAPE

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

Language: Jupyter Notebook - Size: 161 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 54 - Forks: 11

alfredcai/Coursera-Computational-NeuroScience

Coursera Computational-NeuroScience course of the University of Washington

Language: Python - Size: 17.1 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 54 - Forks: 26

Bohdan-Khomtchouk/Biochat

Natural language processing of Gene Expression Omnibus data

Language: Common Lisp - Size: 113 MB - Last synced at: 4 months ago - Pushed at: about 6 years ago - Stars: 53 - Forks: 11

akensert/molgraph

Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.

Language: Python - Size: 1.71 MB - Last synced at: 14 days ago - Pushed at: 3 months ago - Stars: 52 - Forks: 5

maxscheurer/pycontact

Analysis of non-covalent interactions in MD trajectories

Language: Python - Size: 53 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 51 - Forks: 11

MinkaiXu/ConfVAE-ICML21

An End-to-End Framework for Molecular Conformation Generation via Bilevel Programming (ICML'21)

Language: Python - Size: 381 KB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 51 - Forks: 15

lujiarui/Str2Str

Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)

Language: Python - Size: 979 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 49 - Forks: 0

pveber/bistro

A library to build and execute typed scientific workflows

Language: OCaml - Size: 1.58 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 47 - Forks: 11

dohlee/metheor

:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)

Language: Rust - Size: 17.5 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 47 - Forks: 8

gerberlab/mitre

The Microbiome Interpretable Temporal Rule Engine

Language: Python - Size: 52.7 MB - Last synced at: 16 days ago - Pushed at: about 4 years ago - Stars: 47 - Forks: 4

t-neumann/slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

Language: Python - Size: 39.4 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 46 - Forks: 23

dwhswenson/contact_map

Contact map analysis for biomolecules; based on MDTraj

Language: Python - Size: 11 MB - Last synced at: 5 days ago - Pushed at: 5 months ago - Stars: 45 - Forks: 19

aquaskyline/LRSIM

10x Genomics Reads Simulator

Language: C - Size: 29.2 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 45 - Forks: 15

aleimba/bac-genomics-scripts

Collection of scripts for bacterial genomics

Language: Perl - Size: 2.96 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 45 - Forks: 35

montilab/pipeliner

A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

Language: Nextflow - Size: 23.2 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 44 - Forks: 13

DrugBud-Suite/CADD_Vault

Language: HTML - Size: 17.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 43 - Forks: 5

klamt-lab/straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

Language: Python - Size: 39.3 MB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 42 - Forks: 7

biocad/career

Бписок вакансий Π² Π”Π΅ΠΏΠ°Ρ€Ρ‚Π°ΠΌΠ΅Π½Ρ‚Π΅ Π’Ρ‹Ρ‡ΠΈΡΠ»ΠΈΡ‚Π΅Π»ΡŒΠ½ΠΎΠΉ Π‘ΠΈΠΎΠ»ΠΎΠ³ΠΈΠΈ Π² ΠΊΠΎΠΌΠΏΠ°Π½ΠΈΠΈ BIOCAD

Size: 2.44 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 42 - Forks: 8

pengzhangzhi/Awesome-Computational-Structural-Biology

A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.

Size: 14.6 KB - Last synced at: 26 days ago - Pushed at: over 2 years ago - Stars: 42 - Forks: 0

PathwayAndDataAnalysis/causalpath

A project for exploring differentially active signaling paths related to proteomics datasets

Language: Java - Size: 12.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 41 - Forks: 11

Related Topics
bioinformatics 487 machine-learning 134 python 128 genomics 95 systems-biology 85 deep-learning 67 data-science 51 biology 51 computational-chemistry 50 simulation 46 r 45 protein-structure 34 drug-discovery 33 structural-biology 29 sbml 25 protein 23 rna-seq 23 sed-ml 22 mathematical-modelling 21 molecular-dynamics 21 bioinformatics-pipeline 21 python3 20 visualization 20 dna 20 transcriptomics 20 modeling 19 single-cell 19 data-analysis 18 biosimulators 18 genetics 18 statistics 18 cancer-research 17 cancer 17 synthetic-biology 17 molecular-biology 17 jupyter-notebook 17 bioinformatics-tool 17 evolution 16 single-cell-rna-seq 16 combine 16 computational-physics 16 java 16 metabolic-models 15 science 15 scrna-seq 15 phylogenetics 15 cheminformatics 15 omex 15 computational-neuroscience 15 gene-expression 15 drug-design 15 matlab 14 neuroscience 14 ai 14 dna-sequences 14 bioinformatics-analysis 14 proteomics 14 algorithms 14 docker 14 graph-neural-networks 13 chip-seq 13 pytorch 13 immunology 13 biochemistry 13 developmental-biology 13 protein-sequences 13 chemistry 12 fasta 12 research 12 data-visualization 11 cancer-genomics 11 workflow 11 computational-science 11 sequence-alignment 11 biophysics 11 tensorflow 10 ngs 10 protein-protein-interaction 10 omics 10 molecular-simulation 10 pdb 10 metabolism 10 artificial-intelligence 10 deep-neural-networks 10 clustering 10 open-source 10 drug-repurposing 10 protein-design 10 reproducible-research 10 julia 9 network-analysis 9 metagenomics 9 diffusion-models 9 cellular-automata 9 computer-science 9 biopython 9 next-generation-sequencing 9 javascript 9 bash 9 biochemical-networks 9