Topic: "bioinformatics-pipeline"
scipipe/scipipe
Robust, flexible and resource-efficient pipelines using Go and the commandline
Language: Go - Size: 1.06 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 1,094 - Forks: 72
grailbio/reflow
A language and runtime for distributed, incremental data processing in the cloud
Language: Go - Size: 6.96 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 966 - Forks: 52
bacalhau-project/bacalhau
Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.
Language: Go - Size: 191 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 796 - Forks: 96
sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
Language: Perl - Size: 17.7 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 340 - Forks: 190
saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
Language: Python - Size: 7.09 MB - Last synced at: 28 days ago - Pushed at: 3 months ago - Stars: 326 - Forks: 57
r3fang/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
Language: R - Size: 170 MB - Last synced at: 1 day ago - Pushed at: about 2 years ago - Stars: 317 - Forks: 131
lynnlangit/gcp-for-bioinformatics
GCP for Bioinformatics Researchers
Language: Jupyter Notebook - Size: 89.9 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 262 - Forks: 70
sanger-pathogens/snp-sites
Finds SNP sites from a multi-FASTA alignment file
Language: C - Size: 14.7 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 257 - Forks: 49
sanger-pathogens/circlator
A tool to circularize genome assemblies
Language: Python - Size: 25.7 MB - Last synced at: 20 days ago - Pushed at: about 1 year ago - Stars: 240 - Forks: 57
sanger-pathogens/Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Language: Java - Size: 153 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 208 - Forks: 73
nickjcroucher/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Language: Python - Size: 9.69 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 184 - Forks: 53
hillerlab/TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Language: Python - Size: 43.7 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 179 - Forks: 24
sanger-pathogens/ariba
Antimicrobial Resistance Identification By Assembly
Language: Python - Size: 12 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 173 - Forks: 55
kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
Language: Python - Size: 13.8 MB - Last synced at: 6 months ago - Pushed at: almost 3 years ago - Stars: 162 - Forks: 81
vanheeringen-lab/seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Language: Python - Size: 1.39 GB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 156 - Forks: 28
ngless-toolkit/ngless
NGLess: NGS with less work
Language: Haskell - Size: 14.1 MB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 146 - Forks: 25
yupenghe/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Language: Python - Size: 28.5 MB - Last synced at: 5 days ago - Pushed at: almost 2 years ago - Stars: 140 - Forks: 49
cbg-ethz/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 136 - Forks: 46
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
Language: Python - Size: 795 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 133 - Forks: 13
ShujiaHuang/ilus
A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
Language: Python - Size: 845 KB - Last synced at: 29 days ago - Pushed at: 4 months ago - Stars: 132 - Forks: 35
KarchinLab/open-cravat
A modular annotation tool for genomic variants
Language: JavaScript - Size: 9.24 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 120 - Forks: 33
GregorySchwartz/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
Language: Haskell - Size: 22.3 MB - Last synced at: 16 days ago - Pushed at: 7 months ago - Stars: 110 - Forks: 18
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Language: Python - Size: 264 MB - Last synced at: 2 days ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 31
MaayanLab/Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Language: Jupyter Notebook - Size: 4.91 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 102 - Forks: 61
biowdl/tasks
A collection of reusable WDL tasks. Category:Other
Language: WDL - Size: 1.82 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 86 - Forks: 30
chanzuckerberg/czid-web
Infectious Disease Sequencing Platform
Language: TypeScript - Size: 466 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 84 - Forks: 25
algbio/ggcat
Compacted and colored de Bruijn graph construction and querying
Language: Rust - Size: 4.34 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 82 - Forks: 12
urmi-21/pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Language: Python - Size: 204 MB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 82 - Forks: 27
flowhub-team/WholeGenomeSequencing
Whole Genome Sequencing analysis, WGS analysis
Size: 889 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 78 - Forks: 10
mitoNGS/MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
Language: Python - Size: 26.1 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 77 - Forks: 36
twoXes/awesome-structural-bioinformatics
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Language: Python - Size: 31.1 MB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 70 - Forks: 10
YichaoOU/HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
Language: Python - Size: 876 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 69 - Forks: 21
stjude-rust-labs/sprocket
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
Language: Rust - Size: 753 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 68 - Forks: 11
JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Language: Python - Size: 3.91 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 62 - Forks: 7
AuReMe/metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
Language: Jupyter Notebook - Size: 36.3 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 56 - Forks: 7
hillerlab/make_lastz_chains
Portable solution to generate genome alignment chains using lastz
Language: Python - Size: 3.46 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 55 - Forks: 9
sanger-pathogens/iva
de novo virus assembler of Illumina paired reads
Language: Python - Size: 8.46 MB - Last synced at: 22 days ago - Pushed at: almost 4 years ago - Stars: 55 - Forks: 18
GenomiqueENS/eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
Language: Java - Size: 305 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 52 - Forks: 10
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Language: Perl - Size: 3.03 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 52 - Forks: 21
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
Language: HTML - Size: 6.8 MB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 15
sagnikbanerjee15/Finder
A fully automated gene annotator from RNA-Seq expression data
Language: Python - Size: 247 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 50 - Forks: 14
cihga39871/Pipelines.jl
A lightweight and powerful Julia package for computational pipelines and workflows.
Language: Julia - Size: 1.05 MB - Last synced at: 2 days ago - Pushed at: 4 months ago - Stars: 49 - Forks: 2
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
Language: HTML - Size: 38.2 MB - Last synced at: 6 days ago - Pushed at: almost 6 years ago - Stars: 49 - Forks: 19
yangwu91/r2g
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Language: Python - Size: 29 MB - Last synced at: 9 months ago - Pushed at: about 4 years ago - Stars: 48 - Forks: 2
OmarOakheart/nPhase
Ploidy agnostic phasing pipeline and algorithm
Language: Python - Size: 50.5 MB - Last synced at: 30 days ago - Pushed at: over 1 year ago - Stars: 45 - Forks: 5
databio/pypiper
Python toolkit for building restartable pipelines
Language: Python - Size: 1.63 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 44 - Forks: 9
pyladies-brazil/grupo-estudo-bioinformatica
Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
Language: Jupyter Notebook - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 41 - Forks: 13
bystrogenomics/bystro
Bystro genetic analysis (annotation, filtering, statistics)
Language: Python - Size: 73 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 40 - Forks: 13
stjudecloud/oliver 📦
An opinionated Cromwell orchestration manager.
Language: Python - Size: 2.61 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 40 - Forks: 3
gencorefacility/variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
Language: Nextflow - Size: 23.4 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 40 - Forks: 40
andrewjpage/tiptoft
Predict plasmids from uncorrected long read data
Language: Python - Size: 37.8 MB - Last synced at: 1 day ago - Pushed at: over 5 years ago - Stars: 39 - Forks: 10
ewels/nf-core-rnaseq Fork of nf-core/rnaseq
See the main fork of this repository here >>>
Language: Nextflow - Size: 71.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 38 - Forks: 4
conda-incubator/conda-env-builder
Build and maintain multiple custom conda environments all in one place.
Language: Scala - Size: 125 KB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 37 - Forks: 4
koszullab/hicstuff Fork of baudrly/hicstuff
Simple library/pipeline to generate and handle Hi-C data.
Language: Python - Size: 10.9 MB - Last synced at: 9 days ago - Pushed at: 6 months ago - Stars: 37 - Forks: 7
Snakemake-Profiles/lsf
Snakemake profile for running jobs on an LSF cluster
Language: Python - Size: 166 KB - Last synced at: 7 days ago - Pushed at: 10 months ago - Stars: 36 - Forks: 22
cansysbio/ConsensusTME
ConsensusTME Gene Sets and R Script
Language: R - Size: 4.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 36 - Forks: 17
BeatsonLab-MicrobialGenomics/micropipe
A pipeline for high-quality bacterial genome construction using ONT sequencing
Language: HTML - Size: 57.4 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 36 - Forks: 9
lixiangchun/mynotebook
My daily notebook on bioinformatic data analysis and machine learning
Language: Python - Size: 843 KB - Last synced at: 8 months ago - Pushed at: almost 8 years ago - Stars: 36 - Forks: 14
CDCgov/seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Language: Python - Size: 261 MB - Last synced at: 29 days ago - Pushed at: about 1 month ago - Stars: 35 - Forks: 14
montilab/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
Language: R - Size: 5.25 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 34 - Forks: 20
biologger/speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
Language: Python - Size: 5.17 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 34 - Forks: 18
brianyiktaktsui/Skymap
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
Language: Jupyter Notebook - Size: 23.7 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 31 - Forks: 3
TurakhiaLab/ROADIES
Tool for fully-automated inference of species trees from raw genome assemblies
Language: Python - Size: 279 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 30 - Forks: 3
kstawiski/OmicSelector
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Language: R - Size: 54.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 30 - Forks: 3
sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
Language: Perl - Size: 5.23 MB - Last synced at: 9 days ago - Pushed at: almost 3 years ago - Stars: 30 - Forks: 15
DeepChainBio/deepchain-apps
A library for deploying App on deepchain.bio
Language: Python - Size: 56.2 MB - Last synced at: 25 days ago - Pushed at: over 3 years ago - Stars: 30 - Forks: 6
Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
Language: Python - Size: 17.6 MB - Last synced at: 28 days ago - Pushed at: 12 months ago - Stars: 29 - Forks: 3
compomics/meta-proteome-analyzer
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Language: TSQL - Size: 607 MB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 29 - Forks: 10
sanger-pathogens/gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Language: Python - Size: 2.92 MB - Last synced at: 9 days ago - Pushed at: over 6 years ago - Stars: 29 - Forks: 12
MDU-PHL/bohra
A pipeline for bioinformatics analysis of bacterial genomes
Language: Nextflow - Size: 356 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 28 - Forks: 4
sanger-pathogens/plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data
Language: Python - Size: 825 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 28 - Forks: 8
liyao001/BioQueue
A novel pipeline framework to accelerate bioinformatics analysis
Language: Python - Size: 5.27 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 27 - Forks: 9
hammerlab/biokepi
Bioinformatics Ketrew Pipelines
Language: OCaml - Size: 1.87 MB - Last synced at: 16 days ago - Pushed at: over 3 years ago - Stars: 27 - Forks: 4
czc/nb_distribution
novoBreak: local assembly for breakpoint detection in cancer genomes
Language: Perl - Size: 3.21 MB - Last synced at: 9 months ago - Pushed at: about 7 years ago - Stars: 26 - Forks: 6
sanger-pathogens/saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Language: Python - Size: 1.32 MB - Last synced at: 9 days ago - Pushed at: almost 5 years ago - Stars: 25 - Forks: 3
r3fang/snATAC
<<------ Use SnapATAC!!
Language: Python - Size: 104 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 25 - Forks: 10
kundajelab/genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Language: Jupyter Notebook - Size: 431 MB - Last synced at: 6 months ago - Pushed at: almost 7 years ago - Stars: 25 - Forks: 10
wtsi-hpag/scanPAV
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
Language: C - Size: 6.28 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 25 - Forks: 7
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Language: Shell - Size: 43.5 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 24 - Forks: 5
akcorut/kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Language: Python - Size: 610 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 5
MetaSUB/MetaSUB_CAP
A comprehensive pipeline for short read metagenomic data
Language: Python - Size: 1.37 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 24 - Forks: 10
Daylily-Informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Language: Python - Size: 340 MB - Last synced at: about 11 hours ago - Pushed at: about 12 hours ago - Stars: 23 - Forks: 2
DeplanckeLab/ASAP
ASAP : Automated Single-cell Analysis Pipeline
Language: Java - Size: 170 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 23 - Forks: 10
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Language: Python - Size: 17.1 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 23 - Forks: 4
quadram-institute-bioscience/socru
Order and orientation of complete bacterial genomes
Language: Python - Size: 226 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 6
pepkit/looper
A job submitter for Portable Encapsulated Projects
Language: Python - Size: 4.18 MB - Last synced at: 17 days ago - Pushed at: 2 months ago - Stars: 22 - Forks: 7
sunyumail93/PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
Language: Shell - Size: 107 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 22 - Forks: 2
MikeDacre/fyrd
Submit functions and shell scripts to torque and slurm clusters or local machines using python.
Language: Python - Size: 6.55 MB - Last synced at: 2 days ago - Pushed at: over 4 years ago - Stars: 22 - Forks: 8
ranwez/MACSE_V2_PIPELINES
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
Language: Shell - Size: 4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 21 - Forks: 8
dissipative/awesome-bio-go
A curated list of Bioinformatics software written in the Go language.
Language: Makefile - Size: 5.86 KB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 21 - Forks: 1
TravisWheelerLab/drug-sniffer
Sniffing out new drugs
Language: HTML - Size: 68.1 MB - Last synced at: 15 days ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 8
h3abionet/chipimputation
Genotype Imputation Pipeline for H3Africa
Language: Nextflow - Size: 232 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 20 - Forks: 20
sanger-pathogens/Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
Language: Perl - Size: 192 MB - Last synced at: 11 months ago - Pushed at: almost 2 years ago - Stars: 20 - Forks: 29
yanailab/celseq2
Generate the UMI count matrix from CEL-Seq2 sequencing data
Language: Python - Size: 1.34 MB - Last synced at: 1 day ago - Pushed at: over 6 years ago - Stars: 20 - Forks: 13
marieBvr/TEs_genes_relationship_pipeline
Distribution of TEs and their relationship to genes in host genome
Language: Python - Size: 20.1 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 19 - Forks: 4
jithin8mathew/Protein-feature-extraction
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Language: Python - Size: 1.56 MB - Last synced at: 29 days ago - Pushed at: about 3 years ago - Stars: 19 - Forks: 2
Sentieon/sentieon-dnaseq 📦
Sentieon DNAseq
Language: Shell - Size: 60.5 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 19 - Forks: 12
robinvanderlee/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
Language: Perl - Size: 169 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 19 - Forks: 16
niccw/repeatcraftp
meta-pipeline for repetitive element de-fragmentation and annotation
Language: Python - Size: 1.72 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 19 - Forks: 4
nf-core/cookiecutter 📦
DEPRECIATED! Please use nf-core/tools instead
Language: Nextflow - Size: 149 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 19 - Forks: 7
