rna-seq-data | Topic | Ecosyste.ms: Repos

Topic: "rna-seq-data"

seandavi/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Size: 1.54 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3,404 - Forks: 1,021

hbctraining/DGE_workshop 📦

Language: HTML - Size: 37.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 329 - Forks: 162

federicomarini/awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

Size: 300 KB - Last synced at: 6 days ago - Pushed at: 8 months ago - Stars: 135 - Forks: 38

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Language: Python - Size: 264 MB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 32

federicomarini/GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Language: R - Size: 121 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 78 - Forks: 10

federicomarini/pcaExplorer

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Language: R - Size: 60 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 56 - Forks: 17

hbctraining/Intro-to-R-with-DGE 📦

Language: R - Size: 39.5 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 54 - Forks: 43

GoekeLab/proActiv

Estimation of Promoter Activity from RNA-Seq data

Language: R - Size: 195 MB - Last synced at: about 9 hours ago - Pushed at: over 3 years ago - Stars: 53 - Forks: 16

uc-bd2k/GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

Language: HTML - Size: 38.2 MB - Last synced at: about 1 month ago - Pushed at: about 6 years ago - Stars: 49 - Forks: 19

nuno-agostinho/psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

Language: R - Size: 59.8 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 37 - Forks: 11

egaffo/CirComPara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Language: R - Size: 16 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 14 - Forks: 11

theislab/MetaMap

The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.

Language: HTML - Size: 10.9 MB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 8

Transipedia/dekupl

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Size: 47.6 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 2

knowmics-lab/RNAdetector

RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis

Language: JavaScript - Size: 73.2 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 8 - Forks: 8

immunogenomics/amp_phase1_ra_viewer

🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

Language: R - Size: 1.19 MB - Last synced at: 13 days ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 2

MG-RAST/myM5NR

M5NRv2 -- non-redundant protein and rRNA database integration

Language: Perl - Size: 10.8 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 3

tAndreani/RNAseQTL

Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing

Language: R - Size: 17.6 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

sing-group/dewe

DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.

Language: Java - Size: 1.38 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

adeschen/SignatureHeatmap

R package to create heatmaps using signature gene list and transcriptomic data

Language: R - Size: 1.94 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

wilkinsonlab/epigenomics_pipeline

Epigenomics workflow system for the semi-automated analysis of NGS data

Language: Jupyter Notebook - Size: 166 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

SoniaRuiz/rytenlab-website

Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).

Language: JavaScript - Size: 99.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

fomightez/simulated_data

A repository for code that generates various simulated data.

Language: Python - Size: 1.02 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

kevincjnixon/BinfTools

Useful R functions for Multi-omics analyses

Language: R - Size: 5.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 2

sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

williamjeong2/snakemake_RNA-seq

A repository for RNA-seq workflow

Language: R - Size: 12.9 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Language: Shell - Size: 418 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

keslingmj/RNASeq

Analyses of RNA-Seq Data

Language: CSS - Size: 44.3 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

sohilsshah91/nyhais-tcga-series-kmeans

Language: Jupyter Notebook - Size: 23.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

mchialva/RNA2M

Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)

Language: R - Size: 2.95 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

kjohnsen/MMAPPR2data

Sample Data for MMAPPR2

Language: R - Size: 629 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1

elizabethpermina/RNA-Seq-tutorial-Otago-2017

RNA-Seq tutorial materials - slides, training data, code lines

Language: HTML - Size: 758 MB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

QuangHa2k1/awesome-express

Enhanced Express framework with built-in HTTP/2 support, CLI scaffolding tools, and seamless JWT authentication for modern Node.js applications.

Language: TypeScript - Size: 159 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

IBCHgenomic/rnaseqgo

golang standalone for complete rna-seq

Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

pfrsch/EBAC-workshop

Ciência de Dados na Saúde: Construir um modelo para predizer quando uma pessoa tem câncer dado um exame de sequenciamento do RNA

Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

shalinis602/RNASeq-GeneExpression-ML

This project aims to identify gene expression patterns associated with different conditions or diseases, leveraging advanced data processing and model training techniques. The analysis includes preprocessing RNA-Seq data, training multiple classifiers, and evaluating their performance to determine the most effective models for such biological data.

Language: Jupyter Notebook - Size: 116 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

jacobwindsor/tmerge Fork of guigolab/tmerge

Build highly accurate transcripts from long-read RNA data

Language: Python - Size: 1.17 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0