Topic: "splicing-quantification"
comprna/SUPPA
SUPPA: Fast quantification of splicing and differential splicing
Language: Python - Size: 282 KB - Last synced at: 17 days ago - Pushed at: 11 months ago - Stars: 273 - Forks: 63
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Language: Python - Size: 264 MB - Last synced at: 29 days ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 31
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Language: R - Size: 58.9 MB - Last synced at: 3 days ago - Pushed at: 9 days ago - Stars: 37 - Forks: 11
noush-joglekar/scisorseqr
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
Language: R - Size: 1010 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 26 - Forks: 7
vrmelo/SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
Language: Python - Size: 314 KB - Last synced at: about 4 hours ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 3
guigolab/ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Language: Perl - Size: 9.87 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 5
nuno-agostinho/rmats-docker
Docker to run rMATS for splicing quantification and analysis
Language: Python - Size: 23.5 MB - Last synced at: 3 days ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 4
sivkri/splicing-events-calculation
Calculate five major splicing events using rMATS followed by annotation
Language: Jupyter Notebook - Size: 25.4 KB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
nuno-agostinho/vast-tools-docker
Docker to run VAST-TOOLS for splicing quantification and analysis
Language: Dockerfile - Size: 1.3 MB - Last synced at: 3 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
nuno-agostinho/whippet-docker
Docker to run Whippet for splicing quantification and analysis
Size: 1000 Bytes - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
nuno-agostinho/miso-docker
Docker to run MISO for splicing quantification and analysis
Language: Python - Size: 5.07 MB - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 3
nuno-agostinho/suppa-docker
Docker to run SUPPA for splicing quantification and analysis
Language: Python - Size: 1.23 MB - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1