multiqc | Topic | Ecosyste.ms: Repos

Topic: "multiqc"

MultiQC/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language: JavaScript - Size: 41.7 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1,293 - Forks: 616

Hoohm/dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

Language: Python - Size: 6.74 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 146 - Forks: 45

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

Language: Python - Size: 115 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 34 - Forks: 5

nf-core/hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

Language: Nextflow - Size: 5.11 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 25 - Forks: 7

MultiQC/test-data

Test data for MultiQC.

Language: HTML - Size: 152 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 22 - Forks: 144

MultiQC/example-plugin

A miniature example of a MultiQC plugin.

Language: Python - Size: 43.9 KB - Last synced at: 25 days ago - Pushed at: 3 months ago - Stars: 9 - Forks: 6

hanielcedraz/BAQCOM

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

Language: R - Size: 102 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 1

OtimusOne/AFPAP

AlphaFold-based Protein Analysis Pipeline

Language: Python - Size: 9.75 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 2

angelovangel/nxf-fastqc

A simple fastp-MultiQC nextflow pipeline

Language: Nextflow - Size: 36.5 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 3

bixBeta/TReX

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex

Language: Shell - Size: 1.06 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

bixBeta/CFG

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

Language: R - Size: 7.45 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 0

becavin-lab/checkatlas

One liner tool to check the quality of your single-cell atlases.

Language: HTML - Size: 51.9 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 3 - Forks: 1

MultiQC/MultiQC_NGI Fork of NationalGenomicsInfrastructure/MultiQC_NGI

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

Language: Python - Size: 687 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

gustaveroussy/rna-count-kallisto

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Language: Python - Size: 1.1 MB - Last synced at: 11 days ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 3

MultiQC/website 📦

Website files for MultiQC

Language: HTML - Size: 600 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 1

tdayris-perso/wes-mapping-bwa-gatk 📦

Map and post-process your bams for SNP calling

Language: Python - Size: 221 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

transvihmi/nfernandez/RQC

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Last synced at: 10 months ago - Stars: 2 - Forks: 0

NorwegianVeterinaryInstitute/DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards

Language: Python - Size: 501 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

stevekm/nf-niceutils

nice utility methods for Nextflow pipelines

Language: Groovy - Size: 406 KB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

msk-access/access_qc_generation

Generation Quality Controls Files for MSK-ACCESS

Language: Common Workflow Language - Size: 6.16 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

Pinky-cloud224/snakemake_workflow_rna_seq_data_analysis

Language: Jupyter Notebook - Size: 975 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

IMS-Bio2Core-Facility/polya_liftover

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

Language: Python - Size: 188 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

tdayris-perso/rna-count-salmon 📦

Snakemake workflow for Salmon quantification and FastQC quality controls

Language: Python - Size: 396 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

MultiQC/MultiQC_Clarity Fork of Galithil/MultiQC_Clarity

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

Language: Python - Size: 38.1 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 3

CCBR/ASPEN

CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

Language: Shell - Size: 620 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

umccr/dracarys

:dragon_face: DRAGEN workflow tidying :fire:

Language: R - Size: 15.1 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

tdayris/fair_bowtie2_mapping

Align reads over a reference genome, filter aligned-reads, and mark duplicates

Language: Python - Size: 5.91 MB - Last synced at: 20 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

marianasstomas/IBBC_2024_Exame

Pipeline para análise de dados genómicos com FastQC, MultiQC e FastP. Inclui scripts para preparação de ambiente, análise de qualidade e execução interativa para verificação de comandos no Conda.

Language: Shell - Size: 23.4 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

mahesh-panchal/nextflow-quarto-multiqc-demo

Using Quarto within Nextflow to make a MultiQC report

Language: Nextflow - Size: 224 KB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

MultiQC/api.multiqc.info

Code for basic MultiQC API service, providing run-time information about available updates.

Language: Python - Size: 700 KB - Last synced at: about 2 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

julianneyang/transcriptomicsonhoffman

Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.

Language: R - Size: 20.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MultiQC/logo

MultiQC logo and branding information

Size: 1.59 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

reslp/binner

Run multiple metagenome filtering programs using Docker containers

Language: Shell - Size: 31.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

kevin-wamae/fastqc-multiqc-pipeline

A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC

Language: Python - Size: 5.9 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mattgalbraith/multiqc-docker-singularity

Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.

Language: Dockerfile - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Sydney-Informatics-Hub/bamQC-nf

Report summary statistics relating to quality of bam files with Nextflow

Language: Nextflow - Size: 1.03 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

anita-brzoza/university_projects

The repository contain directories of projects done during the bioinformatics degree program

Language: HTML - Size: 894 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

isugifNF/RNAseq

RNAseq from fastq reads to gene counts/quantification

Language: Nextflow - Size: 994 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ineelhere/bioinformatics

Exploring Bioinformatics pipelines

Language: HTML - Size: 1.91 MB - Last synced at: 26 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

B3EF/MultiQC Fork of 418sec/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language: Python - Size: 22.9 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ewels/MultiQC_Clarity Fork of MultiQC/MultiQC_Clarity

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

Language: Python - Size: 35.2 KB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0