Topic: "sambamba"
Clinical-Genomics/chanjo
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Language: Python - Size: 14.7 MB - Last synced at: 30 days ago - Pushed at: 5 months ago - Stars: 50 - Forks: 12
UCSC-Treehouse/mend_qc
Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file
Language: R - Size: 4.22 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0
guigolab/sambamBench-nf
A simple Nextflow pipeline for testing the performance of sambamba vs samtools
Language: Nextflow - Size: 813 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 3 - Forks: 3
tdayris/fair_bowtie2_mapping
Align reads over a reference genome, filter aligned-reads, and mark duplicates
Language: Python - Size: 5.91 MB - Last synced at: 22 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
tdayris/fair_macs2_calling
Snakemake workflow used to call peaks with Macs2
Language: Python - Size: 3.42 MB - Last synced at: 23 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
Sydney-Informatics-Hub/bamQC-nf
Report summary statistics relating to quality of bam files with Nextflow
Language: Nextflow - Size: 1.03 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
