macs2 | Topic | Ecosyste.ms: Repos

Topic: "macs2"

nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Language: Nextflow - Size: 16 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 216 - Forks: 156

ay-lab/ATACProc

ATAC-seq processing pipeline

Language: Shell - Size: 138 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 33 - Forks: 11

ay-lab/ChIPLine

ChIP-seq analysis pipeline

Language: Shell - Size: 93.8 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 8 - Forks: 6

HuntsmanCancerInstitute/MultiRepMacsChIPSeq

Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

Language: Perl - Size: 4.98 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 1

skchronicles/PeakCalling

Benchmarking ChIP-seq peak callers

Language: Python - Size: 3.15 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 3

DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.

Language: R - Size: 141 KB - Last synced at: about 2 years ago - Pushed at: about 9 years ago - Stars: 3 - Forks: 2

jianhong/genomictools

docker file for genomic tools

Language: Dockerfile - Size: 176 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

CCBR/ASPEN

CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

Language: Python - Size: 620 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 2

petergvn/ATACP

ATACP is an AI-to-AI Communication Protocol that ensures identity, intent, and trust between systems. Explore its core concepts on GitHub! 🐙🌐

Size: 7.81 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0

sebastian-gregoricchio/SPACCa

Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

Language: Python - Size: 4.74 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

tdayris/fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

Language: Python - Size: 3.42 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

monnieb92/PROseq_Intron_Intergenic_Enhancers

A pipeline to call intron and intergenic eRNAs from PRO-seq Data

Language: Shell - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

OrangePomeranian/ChiP-seq

This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.

Language: Jupyter Notebook - Size: 4.22 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0