nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Language: Nextflow - Size: 71.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1,016 - Forks: 748

nf-core/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language: Nextflow - Size: 99.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 441 - Forks: 442

nf-core/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

Language: Nextflow - Size: 158 MB - Last synced at: about 19 hours ago - Pushed at: about 21 hours ago - Stars: 355 - Forks: 838

nf-core/scrnaseq

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Language: Nextflow - Size: 43.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 265 - Forks: 188

nf-core/tools

Python package with helper tools for the nf-core community.

Language: Python - Size: 17 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 256 - Forks: 201

nf-core/mag

Assembly and binning of metagenomes

Language: Nextflow - Size: 33.4 MB - Last synced at: about 15 hours ago - Pushed at: about 17 hours ago - Stars: 235 - Forks: 125

nf-core/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Language: Nextflow - Size: 15.9 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 211 - Forks: 151

nf-core/ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Language: Nextflow - Size: 16.6 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 200 - Forks: 135

nf-core/nanoseq

Nanopore demultiplexing, QC and alignment pipeline

Language: Nextflow - Size: 6.67 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 198 - Forks: 93

nf-core/fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

Language: Nextflow - Size: 4.33 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 174 - Forks: 80

nf-core/eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Language: Nextflow - Size: 64 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 166 - Forks: 83

nf-core/methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Language: Nextflow - Size: 23.6 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 165 - Forks: 153

nf-core/atacseq

ATAC-seq peak-calling and QC analysis pipeline

Language: Nextflow - Size: 9.33 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 161 - Forks: 114

nf-core/rnafusion

RNA-seq analysis pipeline for detection of gene-fusions

Language: Nextflow - Size: 19.2 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 153 - Forks: 110

nf-core/taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Language: Nextflow - Size: 15.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 144 - Forks: 49

nf-core/test-datasets

Test data to be used for automated testing with the nf-core pipelines

Size: 28.8 GB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 122 - Forks: 395

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Language: Nextflow - Size: 9.84 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 121 - Forks: 108

nf-core/raredisease

Call and score variants from WGS/WES of rare disease patients.

Language: Nextflow - Size: 186 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 99 - Forks: 44

nf-core/configs

Config files used to define parameters specific to compute environments at different Institutions

Language: Nextflow - Size: 47 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 98 - Forks: 303

nf-core/hic

Analysis of Chromosome Conformation Capture data (Hi-C)

Language: Nextflow - Size: 3.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 95 - Forks: 57

nf-core/smrnaseq

A small-RNA sequencing analysis pipeline

Language: Nextflow - Size: 8.51 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 83 - Forks: 127

nf-core/pangenome

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

Language: Nextflow - Size: 4.23 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 80 - Forks: 18

nf-core/proteinfold

Protein 3D structure prediction pipeline

Language: Nextflow - Size: 7.97 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 79 - Forks: 56

nf-core/differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Language: Nextflow - Size: 9.66 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 78 - Forks: 45

nf-core/website

Code and files for the main nf-core website.

Language: MDX - Size: 3.73 GB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 75 - Forks: 245

nf-core/oncoanalyser

A comprehensive cancer DNA/RNA analysis and reporting pipeline

Language: Nextflow - Size: 5.58 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 66 - Forks: 18

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.3 MB - Last synced at: 16 days ago - Pushed at: 18 days ago - Stars: 65 - Forks: 31

nf-core/spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Language: Nextflow - Size: 7.02 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 61 - Forks: 22

nf-core/airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

Language: Nextflow - Size: 11.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 60 - Forks: 41

nf-core/bacass

Simple bacterial assembly and annotation pipeline

Language: Nextflow - Size: 4.9 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 60 - Forks: 41

nf-core/funcscan

(Meta-)genome screening for functional and natural product gene sequences

Language: Nextflow - Size: 12.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 56 - Forks: 17

nf-core/circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Language: Nextflow - Size: 70.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 54 - Forks: 30

nf-core/scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Language: Nextflow - Size: 2.08 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 54 - Forks: 23

nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Language: Nextflow - Size: 73.2 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 53 - Forks: 51

nf-core/cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

Language: Nextflow - Size: 8.37 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 52 - Forks: 27

nf-core/rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Language: Nextflow - Size: 160 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 50 - Forks: 29

nf-core/demultiplex

Demultiplexing pipeline for sequencing data

Language: Nextflow - Size: 13.7 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 46 - Forks: 43

nf-core/rnavar

gatk4 RNA variant calling pipeline

Language: Nextflow - Size: 4.2 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 46 - Forks: 37

nf-core/deepvariant Fork of lifebit-ai/DeepVariant 📦

Please consider using/contributing to https://github.com/nf-core/sarek

Language: Nextflow - Size: 7.18 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 40 - Forks: 18

Midnighter/nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

Language: Shell - Size: 707 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 9

nf-core/mhcquant

Identify and quantify MHC eluted peptides from mass spectrometry raw data

Language: Nextflow - Size: 25.7 MB - Last synced at: about 20 hours ago - Pushed at: about 21 hours ago - Stars: 34 - Forks: 28

nf-core/scnanoseq

Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Language: Nextflow - Size: 40.5 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 34 - Forks: 10

nf-core/lncpipe Fork of likelet/LncPipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Language: Nextflow - Size: 29.5 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 34 - Forks: 25

nf-core/proteomicslfq

Proteomics label-free quantification (LFQ) analysis pipeline

Language: Nextflow - Size: 3.59 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 33 - Forks: 20

nf-core/isoseq

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Language: Nextflow - Size: 5.75 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 32 - Forks: 16

nf-core/metatdenovo

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

Language: Nextflow - Size: 103 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 29 - Forks: 14

nf-core/variantbenchmarking

Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research

Language: Nextflow - Size: 11.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 28 - Forks: 13

nf-core/circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

Language: Python - Size: 184 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 28 - Forks: 14

nf-core/epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

Language: Nextflow - Size: 4.07 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 19

nf-core/crisprseq

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

Language: Nextflow - Size: 18.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 26 - Forks: 25

nf-core/quantms 📦

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Language: Nextflow - Size: 21.5 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 26 - Forks: 28

nf-core/imcyto

Image Mass Cytometry analysis pipeline

Language: Python - Size: 8.88 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 25 - Forks: 18

carpentries-incubator/workflows-nextflow

Workflow management with Nextflow and nf-core

Language: Nextflow - Size: 20.9 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 25 - Forks: 36

nf-core/genomeassembler

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Language: Nextflow - Size: 4.65 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 24 - Forks: 15

nf-core/hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

Language: Nextflow - Size: 5.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 24 - Forks: 6

nf-core/gwas

UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

Language: Nextflow - Size: 2.78 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 24 - Forks: 18

nf-core/scflow Fork of combiz/nf-core-scflow 📦

Please consider using/contributing to https://github.com/nf-core/scdownstream

Language: Nextflow - Size: 3.14 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 24 - Forks: 9

nf-core/fastquorum

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

Language: Nextflow - Size: 4.97 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 23 - Forks: 13

nf-core/bamtofastq

Converts bam or cram files to fastq format and does quality control.

Language: Nextflow - Size: 155 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 23 - Forks: 14

nf-core/dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Language: Nextflow - Size: 45 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 22 - Forks: 35

nf-core/pathogensurveillance

Surveillance of pathogens using population genomics and sequencing

Language: Nextflow - Size: 282 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 22 - Forks: 6

nf-core/clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

Language: Nextflow - Size: 39.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 21 - Forks: 30

nf-core/kmermaid

k-mer similarity analysis pipeline

Language: Nextflow - Size: 12.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 13

nf-core/nascent

Nascent Transcription Processing Pipeline

Language: Nextflow - Size: 8.61 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 19 - Forks: 11

nf-core/viralintegration

Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

Language: Python - Size: 3.37 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 17 - Forks: 9

nf-core/readsimulator

A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

Language: Nextflow - Size: 7.52 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 17 - Forks: 6

nf-core/genomeannotator

Pipeline for the identification of (coding) gene structures in draft genomes.

Language: Nextflow - Size: 97 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 15 - Forks: 11

nf-core/metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

Language: Nextflow - Size: 46.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 14

nf-core/smartseq2 Fork of icbi-lab/smartseq2_pipeline 📦

A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.

Language: Nextflow - Size: 2.45 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 15 - Forks: 10

nf-core/vscode-extensionpack

A VSCode extension pack for nf-core developers.

Size: 240 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 7

nf-core/tumourevo

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

Language: Nextflow - Size: 2.48 MB - Last synced at: 15 days ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

nf-core/detaxizer

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Language: Nextflow - Size: 5.99 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

nf-core/vipr 📦

Assembly and intrahost / low-frequency variant calling for viral samples

Language: Nextflow - Size: 217 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 14 - Forks: 10

nf-core/exoseq 📦

Please consider using/contributing to https://github.com/nf-core/sarek

Language: Nextflow - Size: 2.77 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 14 - Forks: 25

nf-core/nanostring

An analysis pipeline for Nanostring nCounter expression data.

Language: Nextflow - Size: 4.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 11

nf-core/phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Language: Nextflow - Size: 5.14 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 13 - Forks: 9

nf-core/tfactivity

Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.

Language: Nextflow - Size: 7.32 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 4

nf-core/seqinspector

QC pipeline to inspect your sequences

Language: Nextflow - Size: 924 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 12 - Forks: 31

nf-core/diaproteomics

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

Language: Nextflow - Size: 4.06 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 12 - Forks: 11

nf-core/tower-action Fork of ewels/tower-action 📦

GitHub Action to launch a workflow using Nextflow Tower.

Language: Shell - Size: 833 KB - Last synced at: 22 days ago - Pushed at: about 2 years ago - Stars: 12 - Forks: 6

nf-core/metapep

From metagenomes to epitopes and beyond

Language: Nextflow - Size: 8.35 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 11 - Forks: 6

nf-core/multiplesequencealign

A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.

Language: Nextflow - Size: 3.76 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 7

nf-wrap/main

Nextflow wrapper built around nf-core/modules

Language: Nextflow - Size: 2.22 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 5

nf-core/genomeqc

Compare the quality of multiple genomes, along with their annotations.

Language: Nextflow - Size: 2.61 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 10 - Forks: 16

mskcc-omics-workflows/modules

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

Language: Python - Size: 2.1 MB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 10 - Forks: 6

nf-core/mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

Language: Nextflow - Size: 2.94 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 16

nf-core/cageseq

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

Language: Nextflow - Size: 4.02 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 10 - Forks: 11

nf-core/mnaseseq

MNase-seq analysis pipeline using BWA and DANPOS2.

Language: Nextflow - Size: 4.53 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 10 - Forks: 8

nf-core/coproid

Coprolite host Identification pipeline

Language: Nextflow - Size: 111 MB - Last synced at: about 22 hours ago - Pushed at: about 24 hours ago - Stars: 9 - Forks: 5

nf-core/createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools

Language: Nextflow - Size: 3.27 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 9 - Forks: 7

nf-core/createpanelrefs

Generate Panel of Normals, models or other similar references from lots of samples

Language: Nextflow - Size: 2.86 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 9 - Forks: 8

nf-core/proteinfamilies

Generation and update of protein families

Language: Nextflow - Size: 1.52 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1

nf-core/variantcatalogue

Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.

Language: Nextflow - Size: 184 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 4

davetang/rnaseq

RNA-seq analyses.

Language: Shell - Size: 5.52 MB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 9 - Forks: 5

nf-core/datasync

nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks

Language: Nextflow - Size: 555 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 3

nf-core/pixelator

Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

Language: Nextflow - Size: 4.52 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 3

georgiesamaha/configBuilder-nf

Nextflow config builder scripts for supported HPC infrastructures.

Language: Python - Size: 82 KB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 1

nf-core/denovohybrid Fork of caspargross/nf-core-denovohybrid 📦

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

Language: Nextflow - Size: 2.55 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 3

CDCgov/MIRA-NF

Language: Nextflow - Size: 12.2 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 7 - Forks: 6

mahesh-panchal/Nextflow_sandbox

A playground to explore how to implement things in Nextflow and nf-core

Language: Shell - Size: 85.9 KB - Last synced at: 18 days ago - Pushed at: 19 days ago - Stars: 7 - Forks: 4