Topic: "quantification"
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Language: C++ - Size: 209 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 725 - Forks: 156
pinellolab/CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Language: Python - Size: 2.76 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 296 - Forks: 100
DIPlib/diplib
Quantitative Image Analysis in C++, MATLAB and Python
Language: C++ - Size: 30 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 240 - Forks: 54
COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Language: Rust - Size: 3.94 MB - Last synced at: 7 months ago - Pushed at: 10 months ago - Stars: 165 - Forks: 15
theislab/kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Language: HTML - Size: 7.83 MB - Last synced at: 4 months ago - Pushed at: about 1 year ago - Stars: 156 - Forks: 23
rajewsky-lab/mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
Language: Perl - Size: 7.44 MB - Last synced at: 8 days ago - Pushed at: 8 months ago - Stars: 147 - Forks: 49
Aegis1863/LLMs-Distillation-Quantification
Repo of "Quantification of Large Language Model Distillation"
Language: Python - Size: 44.8 MB - Last synced at: 12 days ago - Pushed at: 29 days ago - Stars: 77 - Forks: 5
songjian/cnstats
获取中国国家统计局网站数据。
Language: Python - Size: 39.1 KB - Last synced at: 5 days ago - Pushed at: 7 months ago - Stars: 77 - Forks: 14
HLT-ISTI/QuaPy
A framework for Quantification written in Python
Language: Python - Size: 9.11 MB - Last synced at: 19 days ago - Pushed at: 5 months ago - Stars: 63 - Forks: 16
PaulingLiu/ROGUE
Assessing the purity of single cell population
Language: R - Size: 9.77 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 61 - Forks: 11
microsoft/PullRequestQuantifier
A highly customizable framework to quantify a pull request within a repository context.
Language: C# - Size: 4.79 MB - Last synced at: 4 days ago - Pushed at: 2 months ago - Stars: 59 - Forks: 37
MannLabs/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
Language: Jupyter Notebook - Size: 176 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 53 - Forks: 5
iquasere/reCOGnizer
A tool for domain based annotation with databases from the Conserved Domains Database
Language: HTML - Size: 61.4 MB - Last synced at: 12 days ago - Pushed at: 7 months ago - Stars: 30 - Forks: 2
shm-unesp/DATASET_PLATEUN01
CONCEPT is a dataset of lamb-wave measured in composite structures in healthy and damaged states. This experiment was conducted at the SHM Lab from UNESP Ilha Solteira.
Language: Jupyter Notebook - Size: 15.6 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 25 - Forks: 5
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Language: Shell - Size: 43.5 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 24 - Forks: 5
elliotekj/DeltaE
DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm
Language: Rust - Size: 12.7 KB - Last synced at: 12 days ago - Pushed at: almost 4 years ago - Stars: 24 - Forks: 9
nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Language: Nextflow - Size: 45 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 22 - Forks: 35
smith-chem-wisc/FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
Language: C# - Size: 12.3 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 20 - Forks: 15
lweasel/piquant
A pipeline to assess the quantification of transcripts.
Language: Python - Size: 3.33 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 19 - Forks: 4
comprna/ORQAS
ORF Quantification pipeline for Alternative Splicing
Language: Python - Size: 72.8 MB - Last synced at: 5 months ago - Pushed at: almost 4 years ago - Stars: 16 - Forks: 6
bkrem/quanti-team
:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable
Language: JavaScript - Size: 1.12 MB - Last synced at: about 1 month ago - Pushed at: over 8 years ago - Stars: 16 - Forks: 1
nf-core/metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
Language: Nextflow - Size: 46.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 14
bigbio/ibaqpy
Absolute quantification package based on quantms.io
Language: HTML - Size: 227 MB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 13 - Forks: 10
cpanse/protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Language: R - Size: 2.42 MB - Last synced at: 4 days ago - Pushed at: 21 days ago - Stars: 11 - Forks: 3
MannLabs/alphaquant
An open-source Python package for accurate and sensitive peptide and protein quantification.
Language: Python - Size: 595 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 1
mchevalier2/crestr
A R package to apply the climate reconstruction CREST.
Language: R - Size: 148 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 0
AICGijon/quantificationlib
QuantificationLib is an open-source library for quantification learning.
Language: Python - Size: 17.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 1
smith-chem-wisc/ProteoformSuite
Construction, quantification, and visualization of proteoform families
Language: C# - Size: 512 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 19
ElisabethKugler/ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
Language: ImageJ Macro - Size: 3.14 MB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 0
erdogant/KNRscore
KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.
Language: Python - Size: 6.18 MB - Last synced at: about 23 hours ago - Pushed at: about 24 hours ago - Stars: 8 - Forks: 1
rohitsuratekar/CardioPipeLine
Pipeline for RNA-seq analysis
Language: Python - Size: 208 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0
Cai-Lab-at-University-of-Michigan/nGauge
A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.
Language: Jupyter Notebook - Size: 15 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 6 - Forks: 1
HawkMRS/pyAMARES
pyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data
Language: Python - Size: 9.01 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 5 - Forks: 1
ElisabethKugler/GliaMorph
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
Language: ImageJ Macro - Size: 166 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0
vcangadi1/EELSAnalyser
EELSAnalyser is a EELS data analysis tool written in MATLAB. Contact : [email protected]
Language: MATLAB - Size: 90.5 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 0
snimmagadda1/PD-and-ET-Tremor-Quantification
🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system
Language: Python - Size: 7.15 MB - Last synced at: 24 days ago - Pushed at: over 8 years ago - Stars: 5 - Forks: 0
aphalo/photobiology
Package ‘photobiology’ defines a system of classes for storing spectral data and accompanying methods and operators. This is the core of a suite of R packages for photobiological calculations.
Language: HTML - Size: 71.2 MB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 1
SBCSnicholsLab/pseudogene_quantification
Repo accompanying our manuscript on quantifying extra-nuclear inserts from population-level low-pass sequencing data
Language: Shell - Size: 69.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0
zfyuan/EpiProfile2.0_Family
EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data
Language: MATLAB - Size: 40.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
ivancarras/color-quantification-firefly-algorithm
Color quantification| reduction using firefly algorithm
Language: C - Size: 19.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
sulaimanvesal/CardiacQuanNet
[IEEE-JBHI 2020] TensorFlow/Keras implementation: Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification
Size: 5.46 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1
fitushar/Quantification-of-Trabeculae-Inside-the-Heart-from-MRI-Using-Fractal-Analysis
In this project, we demonstrate the fractal dimension (FD) and manual segmentation of the Magnetic Resonance Imaging (MRI) of the heart that quantify amount of trabeculae inside the heart.
Language: MATLAB - Size: 20.5 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 0
jsugarelli/quantification
Quantification of qualitative survey data
Language: R - Size: 437 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 1
luizfernandolj/mlquantify
A Python Quantification Library
Language: Python - Size: 42.4 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 3 - Forks: 0
lambda-science/MyoQuant
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant
Language: Python - Size: 3.9 MB - Last synced at: 6 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 1
SilMon/NucDetect
Python interface to detect and quantify intranuclear proteins
Language: Python - Size: 71.1 MB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0
cancerit/pycroquet
python Crispr Read to Oligo QUantification and Evaluation Tool
Language: Jupyter Notebook - Size: 77.8 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1
Scaramir/HD_colocalization
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
Language: Python - Size: 883 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
LBNL-ETA/QUOP
Quantitative Universal Option Prioritizer
Language: Jupyter Notebook - Size: 1.2 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
OfficeChromatography/quanTLC
Quantification in planar chromatography with videodensitograms
Language: R - Size: 69.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
lambda-science/MyoQuant-Streamlit
MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant
Language: Python - Size: 7.09 MB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
dmattek/screenQC
Interactive visualisation of quantitative concepts in high-content screening
Language: R - Size: 269 KB - Last synced at: 11 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1
vguillet/Aircraft_Noise_Annoyance_Quantifier
A MATLAB-based aircraft noise processor and analyser aimed at Quantifying Noise Annoyance of aircrafts on the basis of different metrics
Language: MATLAB - Size: 403 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0
mohitisrani/VVUU_Helicopter_Model_Validation
Verification, Validation, Uncertainty Quantification and Qualification Project
Language: Matlab - Size: 4.16 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0
yufongpeng/ChemistryQuantitativeAnalysis.jl
Quantitative analysis of chemicals
Language: Julia - Size: 640 KB - Last synced at: 13 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
Hammerling-Research-Group/dlq_py
Production code for the Python implementation of the DLQ algorithm
Language: Python - Size: 9.29 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
xieguiyan/EVAtool
Extracellular Vesicles Abundance of ncRNAs expression quantification tool
Language: Jupyter Notebook - Size: 51.9 MB - Last synced at: 23 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 1
pawel-czyz/labelshift
Bayesian Quantification with Black-Box Estimators
Language: Python - Size: 85.9 KB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
KomeijiForce/Active_Passive_Constraint_Koishiday_2024
An advanced persona-driven role-playing system with global faithfulness quantification and optimization. In memory of the Koishi's Day of 2024.
Language: Python - Size: 5.11 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
mirkobunse/QUnfold.jl
Unified framework of quantification and unfolding algorithms
Language: Julia - Size: 405 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
assafna/cell-ecm-project
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
Language: Python - Size: 3.03 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
easyCEST/KALE
The code of a hierarchical K-means clustering method in the article “Hierarchical K-means clustering method for accelerated lorentzian estimation (KALE) in chemical exchange saturation transfer-magnetic resonance imaging quantification”.
Language: MATLAB - Size: 1.27 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
RViMLab/JCM2020-Non-Perfusion-Segmentation
This repository contains the software developed for our 2020 publication to Journal of Clinical Medicine, on the topic of "Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography"
Language: Python - Size: 691 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
jameshughes89/NonlinearModellingWalking
Generating Nonlinear models of data from 6 sensors placed on a human in a very controlled environment.
Language: Python - Size: 43.5 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
nuno-agostinho/RSEM-docker
Docker to run RSEM for transcript quantification
Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1
horacehoff/knowledge-quantify
An experimental machine learning model to quantify knowledge density
Language: Python - Size: 308 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
Hammerling-Research-Group/dlq
Production code for DLQ Algorithm
Language: R - Size: 9.07 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
Laia-Pasquina/CocciVol
Combining FIJI and ilastik to provide a versatile and adaptable approach to automated Bacteria cell classification and cell volume determination from fluorescence images . This powerful combination of FIJI and ilastik (CocciVol) applied to Cocci bacterial cells provides an automated method with higher throughput of calculating cell volume.
Language: ImageJ Macro - Size: 10 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
KoellenspergerLab/MeXpose
A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.
Language: Python - Size: 13.5 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
DSV-CUB/MARISSA
MARISSA - Magnetic Resonance Imaging Software for Standardization
Language: Python - Size: 5.98 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
MUL-Chair-of-Industrial-Logistics/crrt-in-cmsc-ghg-quantification
GHG Quantification spreadsheet for combined road-rail transportation
Size: 59.6 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
bshashikadze/pepquantify
R package to prepare proteomics datasets for the peptide level quantification
Language: R - Size: 233 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
Micheladestito/SlicerSwellingEvaluation
Language: Python - Size: 50.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
songjian/economic-data-tools
经济数据工具
Language: Jupyter Notebook - Size: 223 KB - Last synced at: about 22 hours ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
Waqar351/Journal_paper
This project deals with a supervised learning task: Quantification whose objective is to estimate the class distribution in a test sample.
Size: 44.9 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
NormanTrinh/APLASTIC-Q-rework
Aquatic plastic litter detection, classification and quantification
Language: Jupyter Notebook - Size: 365 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
wohe157/heliq 📦
Quantification of helical morphologies
Language: Python - Size: 27.4 MB - Last synced at: 4 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
workflow-development-interest-group/fragpipe-proteomics-pipeline-tutorial
CWL descriptions for FragPipe Proteomics Pipline
Language: Common Workflow Language - Size: 150 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
ElisabethKugler/Matlab3D-ImageAnalysis
Toolkit for 3D image processing and analysis.
Language: MATLAB - Size: 34.3 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
Drmirdeep/mirdeep2_patch
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
Language: Perl - Size: 69.3 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 2
arunmano121/DDQT
Defect Detection and Quantification Toolbox
Language: Python - Size: 260 KB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
MartinLuquetEcology/Parasitoid-sugar-feeding-and-parasitism-in-intercrops
These datasets and R scripts are complementary to the paper "Aphid honeydew may be the predominant sugar source for Aphidius parasitoids even in nectar-providing intercrops" published in Biological Control (https://doi.org/10.1016/j.biocontrol.2021.104596).
Language: R - Size: 175 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
drpatelh/nf-core-sgrnaquant
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
Language: Nextflow - Size: 64.5 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
nuno-agostinho/sailfish-docker
Docker to run sailfish for quantification of isoform abundance
Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
briatte/cpcp2017 Fork of Celyagd/ODS
Présentation journée d'étude chiffres privés, chiffres publics (31 mai 2017) Open Data & Santé
Size: 7.6 MB - Last synced at: 11 months ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
ginkgobioworks/calibrate Fork of benjiec/calibrate
Create and use linear- and power-regression based calibration curves
Language: Python - Size: 35.2 KB - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1
ricofehr/txt2sine
Transfer text datas by sine audio signal
Language: C - Size: 23.4 KB - Last synced at: about 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0
cpanse/cosmiq
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.
Language: R - Size: 27.3 KB - Last synced at: 21 days ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0
andregustavom/mlquantify
This project presents a framework to deal with a recently proposed machine learning task that aims to estimate the class distribution in a test set, named quantification or counting.
Last synced at: over 2 years ago - Stars: 0 - Forks: 0