post-translational-modification | Topic

Topic: "post-translational-modification"

Villen-Lab/pyAscore

A python package for fast post translational modification localization, powered by Cython.

Language: Python - Size: 626 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 14 - Forks: 4

biodavidjm/artMS

Analytical R Tools for Mass Spectrometry

Language: R - Size: 64.6 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 13 - Forks: 7

wilhelm-lab/PROSPECT

Proteomics Mass Spectrometry Datasets for Machine Learning

Language: Python - Size: 764 KB - Last synced at: 3 months ago - Pushed at: 8 months ago - Stars: 12 - Forks: 3

Vitek-Lab/MSstatsPTM

Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

Language: R - Size: 22 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 10 - Forks: 2

Aksh77/Bio-Scraper

Web scraper for UniProt and iPTMnet database

Language: Python - Size: 201 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 9 - Forks: 0

KarrLab/bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

Language: Python - Size: 17.5 MB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 2

daniaki/pyPPI

A machine learning tool to assign edges in protein-protein interaction networks with a function.

Language: Python - Size: 11 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 5

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).

Language: Python - Size: 6.13 MB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 3

frl21/Phosphorylation_Prediction

This project is conduct research using deep learning to predict phosphorylation site in protein sequences

Language: Jupyter Notebook - Size: 65.6 MB - Last synced at: 3 months ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 1

Integrative-Transcriptomics/PTMVision

Web-application for Interactive Visualization of Post Translational Modifications

Language: HTML - Size: 240 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 4 - Forks: 0

zfyuan/EpiProfile2.0_Family

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

Language: MATLAB - Size: 40.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

VenkMallikarjun/BENPPy

Python implementation of BayesENproteomics with user-customised models and other additional features

Language: Python - Size: 9.31 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

Vitek-Lab/MSstatsTMTPTM

R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling

Language: R - Size: 14.2 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 2

VenkMallikarjun/BayesENproteomics

Non-linear Bayesian elastic net regression for calculating protein and PTM fold changes from peptide intensities in label-free, bottom-up proteomics on heterogeneous primary human samples.

Language: MATLAB - Size: 11.4 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

zfyuan/EpiProfileLite

One minute analysis of histone post-translational modifications by direct infusion mass spectrometry

Size: 3.77 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

KCLabMTU/LMSuccSite

Improving Protein Succinylation Sites Prediction Using Features Extracted from Protein Language Model

Language: Jupyter Notebook - Size: 105 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 2

PedroSeber/CHO_N-glycosylation_prediction

Code and datasets for the publication "Linear and Neural Network Models for Predicting N-glycosylation in Chinese Hamster Ovary Cells Based on B4GALT Levels"

Language: Jupyter Notebook - Size: 4.97 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

PedroSeber/O-GlcNAcylation_Prediction

Code and datasets for the publication "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"

Language: Python - Size: 9.07 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ChildrensMedicalResearchInstitute/ptm-visquant

Simple visualisation of PTM data sites alongside protein motif and family domain information

Language: JavaScript - Size: 8.13 MB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

bio2bel/phosphosite

Language: Python - Size: 33.2 KB - Last synced at: 9 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

DavisLaboratory/pyPPI Fork of daniaki/pyPPI

A machine learning tool to assign edges in protein-protein interaction networks with a function.

Language: Python - Size: 10.2 MB - Last synced at: 12 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics

Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

Language: R - Size: 55.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

maxperutzlabs-ms/SiteToProteinNormalization_in_MultiplexProteomics Fork of moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics

Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

Language: R - Size: 55.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

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