Topic: "peptide-sequences"
alexarnimueller/LSTM_peptides
Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
Language: Python - Size: 268 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 52 - Forks: 22
wilhelm-lab/dlomix
Python framework for Deep Learning in Proteomics
Language: Jupyter Notebook - Size: 372 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 25 - Forks: 10
wilhelm-lab/PROSPECT
Proteomics Mass Spectrometry Datasets for Machine Learning
Language: Python - Size: 764 KB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 12 - Forks: 3
pgarrett-scripps/peptacular
A spectacularly simple package for working with peptide sequences.
Language: Python - Size: 11.3 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 10 - Forks: 0
subramv/helixvis
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
Language: Python - Size: 66.4 KB - Last synced at: 7 days ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 0
pgarrett-scripps/ProteinCleaverStreamlitApp
Protein Cleaver is a versatile tool for protein analysis and digestion.
Language: Python - Size: 748 KB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
brendaferrari/PepToCodes
Script developed to transform the amino acid smiles to one letter code for later analysis
Language: Python - Size: 234 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0
ying-li-python/peptide-match
Using Python to locate a peptide sequence to a reference protein and PTM site
Language: Python - Size: 184 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 0
pgarrett-scripps/PeptideFragmenterStreamlitApp
A peptide fragment ion calculator made with streamlit
Language: Python - Size: 132 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0
Yan98/DPST
A de novo peptide sequencing transformer
Language: Python - Size: 412 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2
rrrlw/helixvis
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
Language: R - Size: 1.02 MB - Last synced at: 6 days ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0
yufongpeng/PeptideSeq.jl
Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.
Language: Julia - Size: 2.98 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
AshrithSagar/MBM-Project-Epic
Modifications part of the Peptide modifications cycle
Language: Python - Size: 346 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
ElsevierSoftwareX/SOFTX_2020_149
Pmlbeta: a PyMOL extension for building β-amino acid insertions and β-peptide sequences. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303678
Language: Python - Size: 211 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
sanjaysgk/ProtPeptigram
Visualization of Immunopeptides Mapped to Source Proteins Across Multiple Samples
Language: Jupyter Notebook - Size: 24.8 MB - Last synced at: 2 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
Ramy-Badr-Ahmed/Bioinformatics-Misc-Scripts
Miscellaneous Scripts in Bioinformatics
Language: Python - Size: 9.34 MB - Last synced at: about 2 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
JoshuaKoopmans/SignalPeptideClassifier
Given files with sequences containing signal peptides and sequences not containing signal peptides, multiple classifiers were tested to see which performs best in the classification of signal peptide sequences.
Language: Python - Size: 1.96 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
yuvisidhu19/Feature-extraction-using-Peptides-and-Peptider
R-script to extract 56 features from a given peptide sequence and handle exceptions in the input file
Language: R - Size: 37.1 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
mirjamdebruin/chlorinated_peptides
Python Code for Peptide Sequencing of plasma after Chlorine Exposure
Language: Jupyter Notebook - Size: 225 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
reoyamanaka/biological_sequence_locator
Locates genomic and peptide sequences for biological analysis.
Language: Python - Size: 1.95 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
abhijeetsingh1704/ATP_for_peptide
This programs calculates the approximate energy (ATP) required to form a peptide chain
Language: Shell - Size: 26.4 KB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
