An open API service providing repository metadata for many open source software ecosystems.

Topic: "mcmc"

pymc-devs/pymc

Bayesian Modeling and Probabilistic Programming in Python

Language: Python - Size: 516 MB - Last synced at: 3 days ago - Pushed at: 6 days ago - Stars: 8,965 - Forks: 2,078

pyro-ppl/numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Language: Python - Size: 94.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 2,427 - Forks: 254

TuringLang/Turing.jl

Bayesian inference with probabilistic programming.

Language: Julia - Size: 35.9 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 2,107 - Forks: 225

JavierAntoran/Bayesian-Neural-Networks

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

Language: Jupyter Notebook - Size: 15.6 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 1,889 - Forks: 305

dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

Language: Python - Size: 32.9 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 1,508 - Forks: 433

owlbarn/owl

Owl - OCaml Scientific Computing @ https://ocaml.xyz

Language: OCaml - Size: 26.1 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 1,265 - Forks: 125

stan-dev/rstan

RStan, the R interface to Stan

Language: R - Size: 195 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1,053 - Forks: 267

avehtari/BDA_py_demos

Bayesian Data Analysis demos for Python

Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: 13 days ago - Pushed at: over 1 year ago - Stars: 1,008 - Forks: 301

yell/boltzmann-machines

Boltzmann Machines in TensorFlow with examples

Language: Jupyter Notebook - Size: 354 MB - Last synced at: 17 days ago - Pushed at: over 3 years ago - Stars: 850 - Forks: 136

mxgmn/ConvChain

Bitmap generation from a single example with convolutions and MCMC

Language: C# - Size: 1.54 MB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 749 - Forks: 48

JWarmenhoven/DBDA-python

Doing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code

Language: Jupyter Notebook - Size: 73.9 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 669 - Forks: 264

avehtari/BDA_R_demos

Bayesian Data Analysis demos for R

Language: HTML - Size: 190 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 573 - Forks: 205

stan-dev/bayesplot

bayesplot R package for plotting Bayesian models

Language: R - Size: 386 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 436 - Forks: 83

FranxYao/Deep-Generative-Models-for-Natural-Language-Processing

DGMs for NLP. A roadmap.

Size: 32 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 390 - Forks: 32

StatisticalRethinkingJulia/StatisticalRethinking.jl

Julia package with selected functions in the R package `rethinking`. Used in the SR2... projects.

Language: Julia - Size: 1.23 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 387 - Forks: 33

wiseodd/MCMC

Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.

Language: Python - Size: 7.81 KB - Last synced at: 8 days ago - Pushed at: over 7 years ago - Stars: 375 - Forks: 126

uncomplicate/bayadera

High-performance Bayesian Data Analysis on the GPU in Clojure

Language: Clojure - Size: 1020 KB - Last synced at: 12 days ago - Pushed at: over 4 years ago - Stars: 365 - Forks: 23

cdslaborg/paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

Language: Fortran - Size: 56.5 MB - Last synced at: 7 days ago - Pushed at: 4 months ago - Stars: 286 - Forks: 35

TuringLang/AdvancedHMC.jl

Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms

Language: Jupyter Notebook - Size: 4.35 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 274 - Forks: 44

TuringLang/MCMCChains.jl

Types and utility functions for summarizing Markov chain Monte Carlo simulations

Language: Julia - Size: 10.5 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 270 - Forks: 28

MLWhiz/data_science_blogs

A repository to keep track of all the code that I end up writing for my blog posts.

Language: Jupyter Notebook - Size: 211 MB - Last synced at: 15 days ago - Pushed at: over 2 years ago - Stars: 250 - Forks: 200

CompEvol/beast2

Bayesian Evolutionary Analysis by Sampling Trees

Language: Java - Size: 93.6 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 247 - Forks: 83

wiseodd/probabilistic-models

Collection of probabilistic models and inference algorithms

Language: Python - Size: 26.4 KB - Last synced at: 8 days ago - Pushed at: about 5 years ago - Stars: 241 - Forks: 76

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 32.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 233 - Forks: 75

minaskar/zeus

⚡️ zeus: Lightning Fast MCMC ⚡️

Language: Python - Size: 197 MB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 233 - Forks: 33

kazewong/flowMC

Normalizing-flow enhanced sampling package for probabilistic inference in Jax

Language: Python - Size: 30.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 230 - Forks: 25

matt-graham/mici

Manifold Markov chain Monte Carlo methods in Python

Language: Python - Size: 32.2 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 230 - Forks: 27

bat/BAT.jl

A Bayesian Analysis Toolkit in Julia

Language: Julia - Size: 18 MB - Last synced at: 13 days ago - Pushed at: 17 days ago - Stars: 216 - Forks: 30

exoplanet-dev/exoplanet

Fast & scalable MCMC for all your exoplanet needs!

Language: Python - Size: 14.8 MB - Last synced at: 7 days ago - Pushed at: 14 days ago - Stars: 215 - Forks: 53

StanJulia/Stan.jl

Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.

Language: Julia - Size: 50.2 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 208 - Forks: 31

beast-dev/beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

Language: Java - Size: 197 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 202 - Forks: 76

Joseph94m/MCMC

Implementation of Markov Chain Monte Carlo in Python from scratch

Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: 7 months ago - Pushed at: over 4 years ago - Stars: 201 - Forks: 83

stan-dev/shinystan

shinystan R package and ShinyStan GUI

Language: R - Size: 32.9 MB - Last synced at: about 19 hours ago - Pushed at: 3 months ago - Stars: 199 - Forks: 47

stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Language: C - Size: 72.5 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 181 - Forks: 63

kthohr/mcmc

A C++ library of Markov Chain Monte Carlo (MCMC) methods

Language: C++ - Size: 217 KB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 178 - Forks: 47

gpstuff-dev/gpstuff

GPstuff - Gaussian process models for Bayesian analysis

Language: MATLAB - Size: 67.2 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 174 - Forks: 61

nimble-dev/nimble

The base NIMBLE package for R

Language: C++ - Size: 70.7 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 171 - Forks: 22

stan-dev/posterior

The posterior R package

Language: R - Size: 4.22 MB - Last synced at: about 18 hours ago - Pushed at: 21 days ago - Stars: 168 - Forks: 25

StatisticalRethinkingJulia/TuringModels.jl 📦

Implementations of the models from the Statistical Rethinking book with Turing.jl

Language: Julia - Size: 398 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 164 - Forks: 17

cmbant/getdist

MCMC sample analysis, kernel densities, plotting, and GUI

Language: Python - Size: 69.6 MB - Last synced at: 11 days ago - Pushed at: 19 days ago - Stars: 163 - Forks: 54

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 27.7 MB - Last synced at: about 11 hours ago - Pushed at: 4 days ago - Stars: 146 - Forks: 65

mattiasvillani/BayesLearnCourse

Bayesian Learning course at Stockholm University

Language: PostScript - Size: 157 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 140 - Forks: 31

mggg/GerryChain

Use MCMC to analyze districting plans and gerrymanders

Language: Python - Size: 134 MB - Last synced at: 17 days ago - Pushed at: 8 months ago - Stars: 134 - Forks: 76

florianhartig/BayesianTools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Language: R - Size: 3.85 MB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 124 - Forks: 30

Gabriel-p/pythonMCMC

A list of Python-based MCMC & ABC packages

Language: HTML - Size: 210 KB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 123 - Forks: 12

TuringLang/AdvancedMH.jl

Robust implementation for random-walk Metropolis-Hastings algorithms

Language: Julia - Size: 647 KB - Last synced at: 5 days ago - Pushed at: 9 days ago - Stars: 112 - Forks: 22

xfim/ggmcmc

Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference

Language: R - Size: 2.31 MB - Last synced at: 16 days ago - Pushed at: almost 2 years ago - Stars: 112 - Forks: 32

mschauer/Bridge.jl

A statistical toolbox for diffusion processes and stochastic differential equations. Named after the Brownian Bridge.

Language: Jupyter Notebook - Size: 10.2 MB - Last synced at: 13 days ago - Pushed at: about 3 years ago - Stars: 112 - Forks: 19

huseinzol05/Machine-Learning-Numpy 📦

Gathers Machine learning models using pure Numpy to cover feed-forward, RNN, CNN, clustering, MCMC, timeseries, tree-based, and so much more!

Language: Jupyter Notebook - Size: 44.9 MB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 104 - Forks: 63

Julia-Tempering/Pigeons.jl

Sampling from intractable distributions, with support for distributed and parallel methods

Language: Julia - Size: 163 MB - Last synced at: about 21 hours ago - Pushed at: about 22 hours ago - Stars: 103 - Forks: 11

minaskar/pocomc

pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation

Language: Python - Size: 28.3 MB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 100 - Forks: 8

stablemarkets/BayesianTutorials

Implementing MCMC sampling from scratch in R for various Bayesian models

Language: HTML - Size: 188 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 100 - Forks: 46

keurfonluu/stochopy

Python library for stochastic numerical optimization

Language: Python - Size: 2.32 MB - Last synced at: 10 days ago - Pushed at: almost 2 years ago - Stars: 97 - Forks: 15

StatisticalRethinkingJulia/SR2TuringPluto.jl

StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)

Language: Julia - Size: 2.26 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 95 - Forks: 20

m-clark/bayesian-basics

:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.

Language: Stan - Size: 93 MB - Last synced at: 22 days ago - Pushed at: about 3 years ago - Stars: 83 - Forks: 26

DOI-USGS/geobipy

Geophysical Bayesian Inference in Python. Docs:

Language: Python - Size: 269 MB - Last synced at: 17 days ago - Pushed at: 20 days ago - Stars: 81 - Forks: 19

floswald/SMM.jl

Simulated Method of Moments for Julia

Language: Julia - Size: 12.6 MB - Last synced at: 9 days ago - Pushed at: 11 months ago - Stars: 81 - Forks: 25

sandialabs/UQTk

Sandia Uncertainty Quantification Toolkit

Language: Fortran - Size: 48.9 MB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 77 - Forks: 27

TuringLang/TuringGLM.jl

Bayesian Generalized Linear models using `@formula` syntax.

Language: Julia - Size: 215 MB - Last synced at: 6 days ago - Pushed at: 23 days ago - Stars: 72 - Forks: 8

FRBNY-DSGE/SMC.jl

Sequential Monte Carlo algorithm for approximation of posterior distributions.

Language: Julia - Size: 114 MB - Last synced at: 4 months ago - Pushed at: 8 months ago - Stars: 72 - Forks: 20

jangevaare/Pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

Language: Julia - Size: 17.7 MB - Last synced at: 4 days ago - Pushed at: over 2 years ago - Stars: 72 - Forks: 10

oliviergimenez/bayesian-stats-with-R

Material for a workshop on Bayesian stats with R

Language: HTML - Size: 68 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 71 - Forks: 22

prmiles/pymcmcstat

Python implementation of MATLAB toolbox "mcmcstat"

Language: Jupyter Notebook - Size: 9.06 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 71 - Forks: 10

vortex-exoplanet/VIP

VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.

Language: Python - Size: 411 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 70 - Forks: 60

saforem2/l2hmc-qcd

Application of the L2HMC algorithm to simulations in lattice QCD.

Language: Jupyter Notebook - Size: 874 MB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 68 - Forks: 9

mjlaine/mcmcstat

MCMC toolbox for Matlab

Language: MATLAB - Size: 2.32 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 68 - Forks: 29

Starfish-develop/Starfish

Tools for Flexible Spectroscopic Inference

Language: Python - Size: 296 MB - Last synced at: 11 months ago - Pushed at: about 2 years ago - Stars: 67 - Forks: 22

englianhu/binary.com-interview-question

次元期权应征面试题范例。 #易经 #道家 #十二生肖 #姓氏堂号子嗣贞节牌坊 #天文历法 #张灯结彩 #农历 #夜观星象 #廿四节气 #算卜 #紫微斗数 #十二时辰 #生辰八字 #命运 #风水 《始祖赢政之子赢家黄氏江夏堂联富•秦谏——大秦赋》 万般皆下品,唯有读书高。🚩🇨🇳🏹🦔中科红旗,歼灭所有世袭制可兰经法家回教徒巫贼巫婆、洋番、峇峇娘惹。https://gitee.com/englianhu

Language: HTML - Size: 11.4 GB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 66 - Forks: 29

rhayes777/PyAutoFit

PyAutoFit: Classy Probabilistic Programming

Language: Python - Size: 26.2 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 63 - Forks: 12

avehtari/BDA_m_demos

Bayesian Data Analysis demos for Matlab/Octave

Language: MATLAB - Size: 3.04 MB - Last synced at: 8 days ago - Pushed at: over 5 years ago - Stars: 63 - Forks: 39

handley-lab/anesthetic

Nested Sampling post-processing and plotting

Language: Python - Size: 8.41 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 58 - Forks: 17

dm13450/dirichletprocess

Build dirichletprocess objects for data analysis

Language: R - Size: 10.1 MB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 58 - Forks: 15

cleanzr/dblink

Distributed Bayesian Entity Resolution in Apache Spark

Language: Scala - Size: 455 KB - Last synced at: 8 months ago - Pushed at: almost 4 years ago - Stars: 57 - Forks: 9

eigenfoo/littlemcmc

A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.

Language: Python - Size: 730 KB - Last synced at: 7 days ago - Pushed at: 9 months ago - Stars: 55 - Forks: 10

mingzhang-yin/SIVI

A variational inference method with accurate uncertainty estimation. It uses a new semi-implicit variational family built on neural networks and hierarchical distribution (ICML 2018).

Language: MATLAB - Size: 740 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 53 - Forks: 14

lxuechen/BDMC

PyTorch implementation of Bidirectional Monte Carlo, Annealed Importance Sampling, and Hamiltonian Monte Carlo.

Language: Python - Size: 3.05 MB - Last synced at: 9 days ago - Pushed at: almost 4 years ago - Stars: 52 - Forks: 11

yomichi/SpinMonteCarlo.jl

Markov chain Monte Carlo solver for lattice spin systems implemented in Julialang

Language: Julia - Size: 972 KB - Last synced at: 11 days ago - Pushed at: 5 months ago - Stars: 50 - Forks: 9

metrumresearchgroup/Torsten

library of C++ functions that support applications of Stan in Pharmacometrics

Language: C++ - Size: 704 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 50 - Forks: 11

hpaulkeeler/posts

Pieces of code that have appeared on my blog.

Language: Python - Size: 891 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 49 - Forks: 24

AustinRochford/webmc3

A web interface for exploring PyMC3 traces

Language: Python - Size: 52.1 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 46 - Forks: 9

bikestra/bdapy

Reproducing plots of Bayesian Data Analysis (Gelman et al, 3rd Edition) in Python

Language: Python - Size: 1.07 MB - Last synced at: over 1 year ago - Pushed at: about 10 years ago - Stars: 46 - Forks: 8

asael697/bayesforecast

Automatic forecasting and Bayesian modeling for time series with Stan

Language: C++ - Size: 9.64 MB - Last synced at: about 7 hours ago - Pushed at: about 8 hours ago - Stars: 45 - Forks: 6

helske/walker

Bayesian Generalized Linear Models with Time-Varying Coefficients

Language: HTML - Size: 7.75 MB - Last synced at: 6 months ago - Pushed at: 8 months ago - Stars: 45 - Forks: 10

NumCosmo/NumCosmo

NumCosmo main code

Language: C - Size: 203 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 44 - Forks: 18

merliseclyde/BAS

BAS R package for Bayesian Model Averaging and Variable Selection

Language: R - Size: 149 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 44 - Forks: 16

oscaribv/pyaneti

A multi-planet Radial Velocity and Transit modelling software

Language: Jupyter Notebook - Size: 9.23 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 44 - Forks: 13

tpapp/LogDensityProblems.jl

A common framework for implementing and using log densities for inference.

Language: Julia - Size: 952 KB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 41 - Forks: 9

pmocz/mcmc-python

Create Your Own Metropolis-Hastings Markov Chain Monte Carlo Algorithm for Bayesian Inference (With Python)

Language: Python - Size: 232 KB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 41 - Forks: 7

luisdamiano/BayesHMM

Full Bayesian Inference for Hidden Markov Models

Language: R - Size: 69.9 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 40 - Forks: 20

kiudee/bayes-skopt

A fully Bayesian implementation of sequential model-based optimization

Language: Python - Size: 7 MB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 39 - Forks: 6

aesara-devs/aemcmc

AeMCMC is a Python library that automates the construction of samplers for Aesara graphs representing statistical models.

Language: Python - Size: 383 KB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 39 - Forks: 11

tpapp/DynamicHMCExamples.jl

Examples for Bayesian inference using DynamicHMC.jl and related packages.

Language: Jupyter Notebook - Size: 653 KB - Last synced at: 11 days ago - Pushed at: 26 days ago - Stars: 37 - Forks: 3

TuringLang/MCMCTempering.jl

Implementations of parallel tempering algorithms to augment samplers with tempering capabilities

Language: Julia - Size: 565 KB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 37 - Forks: 5

MFreidank/pysgmcmc

Bayesian Deep Learning with Stochastic Gradient MCMC Methods

Language: Python - Size: 12.1 MB - Last synced at: 22 days ago - Pushed at: over 3 years ago - Stars: 37 - Forks: 8

StatisticalRethinkingJulia/MCMCBenchmarks.jl

Comparing performance and results of mcmc options using Julia

Language: Julia - Size: 22.2 MB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 37 - Forks: 6

masterai-top/The-strongest-AI-in-Texas-Hold-em-1-to-1

德州AI,MasterAI is an AI poker dedicated to suport n-play (single- or multi-agent) Texas Hold'em imperfect-informatin games.。MasterAI v2.0是从MasterAI v1.0衍生出来的迭代算法,它在非完全信息游戏中利用了通用的强化学习+搜索,并在一对一无限押注的德州扑克中实现了超人的表现。AI源码出售。Tg:@xuzongbin001;E-mail:[email protected]

Language: C++ - Size: 3.72 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 36 - Forks: 9

mgorinova/autoreparam

Automatic Reparameterisation of Probabilistic Programs

Language: Python - Size: 623 KB - Last synced at: 5 months ago - Pushed at: almost 5 years ago - Stars: 36 - Forks: 3

ChunyuanLI/pSGLD

AAAI & CVPR 2016: Preconditioned Stochastic Gradient Langevin Dynamics (pSGLD)

Language: Matlab - Size: 27.4 MB - Last synced at: 14 days ago - Pushed at: over 6 years ago - Stars: 35 - Forks: 12

NREL/EvoProtGrad

Directed evolution of proteins in sequence space with gradients

Language: Jupyter Notebook - Size: 9.66 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 34 - Forks: 4

SebastianBocquet/pygtc

Make a sweet giant triangle confusogram (GTC) plot

Language: Jupyter Notebook - Size: 26.1 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 34 - Forks: 9

Related Topics
bayesian-inference 178 python 89 bayesian 86 bayesian-statistics 63 machine-learning 54 r 51 markov-chain-monte-carlo 45 monte-carlo 43 metropolis-hastings 40 statistics 35 mcmc-sampler 33 stan 32 variational-inference 30 julia 29 bayesian-data-analysis 26 probabilistic-programming 25 markov-chain 24 pymc3 24 hmc 21 astrophysics 20 deep-learning 19 bayesian-methods 19 r-package 19 inference 19 sampling 18 astronomy 17 hamiltonian-monte-carlo 17 gibbs-sampling 17 emcee 16 gaussian-processes 14 cosmology 13 regression 13 julia-language 13 jags 13 visualization 12 phylogenetics 12 data-science 12 sampling-methods 11 inverse-problems 11 clustering 11 uncertainty-quantification 10 matlab 10 pytorch 9 python3 9 classification 9 hierarchical-models 9 probabilistic-graphical-models 9 cpp 9 rstats 8 bayesian-optimization 8 turing 8 time-series 8 c 8 gibbs-sampler 8 probabilistic-models 8 optimization 8 tensorflow 8 mpi 8 adaptive-mcmc 7 evolution 7 cran 7 bayes 7 mcmc-sampling 7 gibbs 7 simulation 7 statistical-analysis 7 mcmc-methods 7 monte-carlo-simulation 6 computational-statistics 6 jupyter-notebook 6 numpy 6 algorithm 6 linear-regression 6 regression-models 6 bayesian-analysis 6 jax 6 geophysics 6 generative-model 6 data-analysis 6 logistic-regression 6 random-walk 6 bayesian-neural-networks 6 metropolis-hastings-algorithm 5 approximate-inference 5 tutorial 5 smc 5 variational-autoencoder 5 vae 5 statistical-models 5 revbayes 5 mixture-model 5 model 5 probabilistic-data-analysis 5 reinforcement-learning 5 probability 5 social-network-analysis 5 graphical-models 5 hammer 5 physics 5 particle-filter 5