Topic: "dna-methylation"
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language: Nextflow - Size: 24.2 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 168 - Forks: 157
nloyfer/wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Language: Python - Size: 32.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 155 - Forks: 45
yupenghe/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Language: Python - Size: 28.5 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 143 - Forks: 51
crazyhottommy/DNA-methylation-analysis
DNA methylation analysis notes from Ming Tang
Size: 17.6 KB - Last synced at: 6 days ago - Pushed at: almost 6 years ago - Stars: 87 - Forks: 35
xie186/ViewBS
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
Language: Perl - Size: 7.55 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 76 - Forks: 28
zwdzwd/sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
Language: R - Size: 18.4 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 73 - Forks: 37
zhou-lab/biscuit
BISulfite-seq CUI Toolkit
Language: C - Size: 6.79 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 64 - Forks: 24
dohlee/metheor
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
Language: Rust - Size: 17.5 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 47 - Forks: 8
lhqing/ALLCools
Toolkit for single-cell DNA methylation analysis.
Language: Python - Size: 282 MB - Last synced at: 28 days ago - Pushed at: about 1 month ago - Stars: 42 - Forks: 20
ben-laufer/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Language: R - Size: 4.62 MB - Last synced at: 8 months ago - Pushed at: almost 2 years ago - Stars: 39 - Forks: 23
CompEpigen/methrix
An R :package: for fast and flexible DNA methylation analysis
Language: R - Size: 103 MB - Last synced at: 8 days ago - Pushed at: 23 days ago - Stars: 32 - Forks: 12
LabShengLi/nanome
NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
Language: Python - Size: 130 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 30 - Forks: 9
jlab-code/MethylStar
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Language: Python - Size: 2.96 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 29 - Forks: 6
MicrobialDarkMatter/nanomotif
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
Language: Python - Size: 16.2 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 28 - Forks: 1
yupenghe/REPTILE
Predicting regulatory DNA elements based on epigenomic signatures
Language: Python - Size: 84.5 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 28 - Forks: 4
ben-laufer/CpG_Me
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
Language: Shell - Size: 1.01 MB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 20 - Forks: 11
andreaskapou/BPRMeth
Modelling DNA methylation profiles
Language: R - Size: 6 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 19 - Forks: 2
sartorlab/methylSig
R package for DNA methylation analysis
Language: R - Size: 26.1 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 17 - Forks: 5
qzhang314/DNAm-based-age-predictor
A chronological age predictor based on DNA methylation
Language: R - Size: 40 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 8
benoukraflab/TFregulomeR-old
TFregulomeR reveals transcription factors’ context-specific features and functions
Language: R - Size: 7.26 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 15 - Forks: 3
NIGMS/DNA-Methylation-Sequencing-Analysis-with-WGBS
In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow
Language: Jupyter Notebook - Size: 13.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 4
anders-biostat/MethSCAn Fork of LKremer/scbs
Python package with CLI for the analysis of single cell methylation data.
Language: Python - Size: 213 MB - Last synced at: 7 days ago - Pushed at: 9 months ago - Stars: 14 - Forks: 4
transbioZI/BioMM
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Language: HTML - Size: 12.2 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 1
BIMSBbioinfo/deconvR
The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
Language: R - Size: 39.8 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 10 - Forks: 3
databio/COCOA
Annotating epigenetic variation among samples with region sets in R
Language: R - Size: 4.26 MB - Last synced at: 4 months ago - Pushed at: 7 months ago - Stars: 10 - Forks: 0
JD2112/methylr
methylR: a single shiny solution from sequencer data to pathway analysis
Language: HTML - Size: 124 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 10 - Forks: 1
cgplab/PAMES
Tool to estimate purity of tumor samples exploiting DNA Methylation data
Language: R - Size: 165 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 8
LieberInstitute/Alzheimers_DNAm
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Language: R - Size: 51 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 10 - Forks: 3
hellosunking/Msuite2
Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance
Language: C++ - Size: 74.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 9 - Forks: 2
NIGMS/Integrating-Multi-Omics-Datasets
Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project
Language: HTML - Size: 206 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 2
JiejunShi/CAMDA
Quantify the Concurrence of DNA Methylation and De-methylation
Language: Python - Size: 7.63 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 0
sing-group/bicycle
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
Language: Java - Size: 300 KB - Last synced at: 30 days ago - Pushed at: about 4 years ago - Stars: 8 - Forks: 1
jordiabante/CpelAsm.jl
Julia module to perform haplotype allele-specific DNA methylation analysis.
Language: Julia - Size: 2.5 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0
BBCG/epialleleR
Fast, epiallele-aware methylation caller and reporter — an R/Bioconductor package
Language: R - Size: 83.3 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 7 - Forks: 1
cemordaunt/comethyl
An R package for weighted region comethylation network analysis
Language: R - Size: 33.5 MB - Last synced at: 11 months ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 2
aldringsvitenskap/epigeneticclock
Calculate DNA methylation age using Horvath 2013 method
Language: R - Size: 3.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 7 - Forks: 15
YaoLi3/nanopore-methylation
Long sequencing reads classifier
Language: Python - Size: 41.7 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 4
cemordaunt/DMRfinder
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
Language: R - Size: 7.85 MB - Last synced at: 11 months ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 4
benoukraflab/TFregulomeR Fork of Matthew-Dyer792/tfregulomer-dev
TFregulomeR reveals transcription factors’ context-specific features and functions
Language: R - Size: 7.33 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0
supermaxiste/ARPEGGIO
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Language: Python - Size: 84.3 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0
tagtag/TDbasedUFE
This is a R package that intends to perform all the features possible by tensor decomposition based unsupervised feature extraction
Language: R - Size: 2.01 MB - Last synced at: 14 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 0
uds-helms/BEclear
Correction of batch effects in DNA methylation data
Language: R - Size: 1.07 MB - Last synced at: 4 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 0
seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
Language: Python - Size: 1.06 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0
ben-laufer/CGi
Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
Language: R - Size: 380 KB - Last synced at: 8 months ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 1
sartorlab/mint
A pipeline for the integration of DNA methylation and hydroxymethylation data
Language: R - Size: 13 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 5 - Forks: 4
ErickNavarroD/RAMEN
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
Language: R - Size: 12.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0
Krebslabrep/Kreibich_2023_5mC_at_enhancers
Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)
Language: R - Size: 14.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0
Duran-FerrerM/Pan-B-cell-methylome
Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.
Language: R - Size: 73.4 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1
CTLife/PipiDABS 📦
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
Language: R - Size: 127 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 3
nat2bee/Foragers_vs_Nurses
Data and scripts from the manuscript: Gene expression and epigenetics reveal species-specific mechanisms acting upon common molecular pathways in the evolution of task division in bees
Language: R - Size: 73.9 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1
cemordaunt/WilsonDiseaseEpigenome
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
Language: R - Size: 111 KB - Last synced at: 11 months ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 0
nshen7/decemedip
An R package for deconvoluting cell types in bulk-tissue/cell-free MeDIP-seq data leveraging a Bayesian hierarchical model. Depends on RStan.
Language: C++ - Size: 71.3 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 3 - Forks: 1
markziemann/ART_methylation
Meta-analysis of DNA methylation in ART
Language: R - Size: 196 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 2
LieberInstitute/brain-epigenomics
Language: R - Size: 832 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2
nhejazi/methyvim 📦
:package: :microscope: R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis
Language: TeX - Size: 4.99 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0
andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
Language: C++ - Size: 3.84 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0
eliopato/pylluminator
Python package for processing and analyzing Illumina DNA methylation data
Language: Python - Size: 139 MB - Last synced at: 17 days ago - Pushed at: 18 days ago - Stars: 2 - Forks: 0
vsubasri/LFS-Early-Cancer-Onset-Prediction
DNA methylation predicts early onset of primary tumor in patients with Li-Fraumeni Syndrome
Language: R - Size: 2.02 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
benoukraflab/forkedTF Fork of Matthew-Dyer792/forkedTF-dev
ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.
Language: R - Size: 17.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
linquynus/TFregulomeR-dev
TFregulomeR reveals transcription factors’ context-specific features and functions
Language: R - Size: 7.36 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 3
paujedynak/reffree_cell_mix_tutorial
Example of an estimation of cell-type proportions using reference-free method (RefFreeEWAS)
Size: 1.62 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
jordiabante/CpelNano.jl
DNA methylation landscape analysis for nanopore sequencing data.
Language: Julia - Size: 4.69 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1
JD2112/TwistMethNext
A NextFlow pipeline for Twist NGS DNA Methylation data analysis
Language: HTML - Size: 28.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
BioTechCo/main_project
Cancer prediction using DNA methylation
Language: HTML - Size: 690 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 2
GilbertLabUCSF/Decitabine-treatment
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Language: Jupyter Notebook - Size: 3.58 GB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1
xshaonrc/DLBepigenetics
Data analysis of DNA methylation EPIC array data in post-mortem brain tissue from DLB and control subjects.
Language: R - Size: 38.1 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1
JD2112/Alveolar-Cell-Type-Deconvolution
DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types
Language: R - Size: 542 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
cwarden45/COHCAP
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
Language: R - Size: 210 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
sparshgup/DNAMethyl
Predicts the age of a person using the methylation frequencies of CpG sites in human blood/saliva samples.
Language: Python - Size: 5.91 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
raulsanzr/DNA-Methylation
R-based DNA methylation array data analysis pipelines.
Language: R - Size: 15.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
retrogenomics/bs-ATLAS-seq
bs-ATLAS-seq analysis scripts
Language: Shell - Size: 10.8 MB - Last synced at: about 3 hours ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
Sanaz01/nanopore
Identification of epigenetic sites in MealyBugs using ONT Nanopore Sequencing
Language: R - Size: 388 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
jarnokoetsier/MidlifeDementiaRisk
DNA Methylation-based Prediction of Midlife Dementia Risk
Language: R - Size: 1.62 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
paulynamagana/Gene_Analysis
Analysis of data from GEO
Language: R - Size: 111 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
DanielAlhassan/idDMR
idDMR - Identify Differentially Methylated Regions for microarray data
Language: R - Size: 1.93 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
jonellevillar/Midway
Midway evaluation 2021 for PhD project
Language: JavaScript - Size: 21.8 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
kevin-murgas/DNAmethylation-hierarchicalmodel
Data processing, model fitting, and analysis code for the hierarchical DNA methylation model developed by Murgas et al. (2021)
Language: R - Size: 96.2 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1
jordiabante/CpelTdm.jl
Differential DNA methylation landscape analysis for targeted bisulfite-sequencing.
Language: Julia - Size: 752 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
littleblackfish/apis-model
Discriminative modeling to support cis-regulation of DNA methylation
Language: Jupyter Notebook - Size: 3 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
Size: 37.1 KB - Last synced at: 10 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
littleblackfish/apis-methylation
DNA methylation in the honey bee and some other Hymenopterans
Language: Jupyter Notebook - Size: 1.79 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
okartal/population_epigenetics
Population analysis of DNA methylation
Language: Python - Size: 216 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINT
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
Language: R - Size: 15.6 KB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1
cxli233/gamete-small-RNA
R Markdown files for analyses of rice small RNA, gene expression and DNA methylation
Size: 29.6 MB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1
lancelothk/BSPAT
bisulfite sequencing pattern analysis tool
Language: Java - Size: 51.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 1
sartorlab/mint_galaxy
Galaxy pipeline for the Mint
Language: Shell - Size: 132 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
demichelislab/NEMOcode
Code to estimate Tumor Content end Phenotype Evidence score from samples sequenced with the NEMO panel
Language: R - Size: 2.8 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 1
LDolanLDolan/dna-str-matcher
A web-based tool that detects short tandem repeats in DNA and highlights potential gene-like structures using custom input.
Language: Python - Size: 21.5 KB - Last synced at: 17 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0
BBCG/ramr
Detection of rare aberrantly methylated regions / epimutations in array and NGS data — an R/Bioc package
Language: R - Size: 26.1 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 1
andreyhgl/methylome-analysis
Pipeline for differential DNA methylation analysis
Language: R - Size: 4.33 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
herdiantrisufriyana/rplec
An R package of placental epigenetic clock to estimate aging by DNA-methylation-based gestational age
Language: R - Size: 47.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
sophiamjiali/aml-epi-transcriptome-integration
An R-based, automated, and reproducible workflow for integrated differential analysis of DNA methylation and RNA-seq in acute myeloid leukemia. Adapter files can extend the pipline to other AML subtypes, cohorts, or datasets.
Size: 6.84 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
Leesure001/Integrative_CTS_DNAm
Integrative Cell-Type-Specific Differential Methylation Analysis Pipeline
Language: R - Size: 7.29 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
ElizabethHemenway/Ends_analysis_visualization
Used for making clustered heatmaps to visualize ends analysis data. Analysis used to characterize spreading of DNA methylation outside TE boundaries in a ros1 mutant.
Language: Shell - Size: 22.5 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
eliopato/pylluminator-data
Metadata used to process Illumina Infinium DNA methylation data with pylluminator
Language: Python - Size: 733 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
jarnokoetsier/DementiaRiskPrediction
Blood-derived DNA methylation-based prediction of midlife dementia risk
Language: R - Size: 1.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 2
JuliusPinsker/bioconductor-learning-container
🧬 Containerized development environment for Harvard's Professional Certificate in Data Analysis for Genomics (PH525.x series). Streamlined setup for Bioconductor, R, and genomic data analysis with RStudio and DevContainer support.
Language: Dockerfile - Size: 9.77 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
JiejunShi/PopCanyon
Discover the under-methylated regions in population
Language: Python - Size: 43.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Suirotras/MCLS_writing_assignment_data
This repository contains the data and code created during the writing assignment of my master's program (Molecular and cellular life sciences).
Language: HTML - Size: 6.19 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
benloklab/cfmedip_sclc_iscience
This repository contains the code used in the following publication: doi.org/10.1016/j.isci.2022.105487
Language: R - Size: 18.6 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
