fgcz/prolfqua

Differential Expression Analysis tool box R lang package for omics data

Language: R - Size: 771 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 45 - Forks: 8

KatrionaGoldmann/volcano3D

An R package to plot interactive three-way differential expression analysis

Language: HTML - Size: 219 MB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 37 - Forks: 8

epigen/dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

Language: R - Size: 153 KB - Last synced at: about 14 hours ago - Pushed at: about 15 hours ago - Stars: 27 - Forks: 2

epigen/dea_seurat

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Language: R - Size: 358 KB - Last synced at: 25 days ago - Pushed at: 5 months ago - Stars: 21 - Forks: 11

xinhe-lab/GSFA

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

Language: C++ - Size: 1.32 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 1

bharathananth/compareRhythms

Approaches to identify Differential Rhythmicity

Language: TeX - Size: 10.7 MB - Last synced at: 27 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 6

shehio/Computational-Biology

Language: Jupyter Notebook - Size: 21.6 MB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 1

OpenOmics/modr

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

Language: Python - Size: 689 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 1

pentalpha/r-peridot

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

Language: Java - Size: 18.9 MB - Last synced at: 5 days ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 0

euxhenh/grinch

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Language: Python - Size: 318 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

jawa23bio/RNA-Seq

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

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sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

MendenLab/miRNAInt_Ferroptosis

Multi-omics differential expression and integration using PPI networks

Language: R - Size: 2.79 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

paulynamagana/Gene_Analysis

Analysis of data from GEO

Language: R - Size: 111 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

jungsoh/transcriptomics-course

Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining

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merlinis12/RNA-Seq-Data-Analysis-in-R

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

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shussin245/FDR-Hedenfalk-Microarray

Reproducing key findings from Storey and Tibshirani (2003) using preprocessed microarray data to analyze differentially expressed genes (DEGs). Leveraging R and statistical packages to explore the impact of parametric, permutation-based, and rank-based methods on False Discovery Rates.

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dominhduy09/maple

maple differential equation

Size: 55.8 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

labjc/PyDEG

Differential expression analysis for bulk RNA-seq data.

Language: Python - Size: 25.4 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

abarrenos/EasyDEA

EasyDEA: An Automated Tool for Differential Expression Analysis

Language: R - Size: 2.04 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

programerkotik/Differential-Gene-Expression-Analysis

Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.

Language: R - Size: 161 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

ATA82/MotifSearcher

Here, we describe and provide an RNA-Seq analysis of a RIP assay to understand the mechanism of AML del(9q) progression. (Ali T. Abdallah)

Language: R - Size: 2.92 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

daniellakavanna/Transcriptomics-DE-Analysis

Bioinformatics - Differential Expression Analysis

Language: R - Size: 9.77 KB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

kirushka/Tat_in_B_cells

Differential gene expression and gene enrichment analyses of B-cell line with ectopic expression of HIV-1 Tat protein

Language: R - Size: 72.3 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

upendrabhattarai/denovo-RNA-Seq-On-Nesi

This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.

Size: 39.1 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

swiri021/NWPV2

Method of Combined P-value to identify Differential Expressed Gene in dataset

Language: Python - Size: 10.7 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

yotammarton/bioinformatics_course

GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder

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EliasFarr/SPOT

SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles

Language: R - Size: 19.1 MB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 2

animesh/diffExpr Fork of timoschd/geocoding_shiny

R Shiny app for differential-expression analysis using T-test. The app is automatically deployed via GH Actions to shinyapp.io available as https://fuzzylife.shinyapps.io/diffExpr/

Language: R - Size: 710 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

insilicolife/micti

MICTI- Marker gene Identification for Cell Type Identity

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swiri021/Difference_test_with_permutation

Difference test with Gene expression by permutation method( by T-test and median test)

Language: Python - Size: 16.6 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1