Topic: "gene-expression-analysis"
snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Language: Python - Size: 16.6 MB - Last synced at: 2 months ago - Pushed at: 10 months ago - Stars: 339 - Forks: 208
sivkri/small-RNA-Seq-Analysis
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
Language: Shell - Size: 1.71 MB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
jawa23bio/RNA-Seq
RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.
Language: HTML - Size: 985 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
lhartmanis/compound-screen
Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments
Language: Python - Size: 14.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
shussin245/GeneExpressionAnalysis
A tutorial demonstrating how to analyze gene expression data using elastic net models to predict patient responses to immunotherapy, focusing on regularization, cross-validation, and feature importance.
Language: Jupyter Notebook - Size: 627 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
BothBosu/Gene-Expression-EDA-of-Breast-Tumor-and-Normal-Tissue
This project involves an exploratory data analysis (EDA) of gene expression in breast tumor and normal tissue as part of the ICCS361 course at Mahidol University International College.
Language: Jupyter Notebook - Size: 7.32 MB - Last synced at: 14 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
Saherpathan/BioInnovate
Gene expression analysis and classification using XGBoost and Differential Expression Analysis (DES)
Language: Jupyter Notebook - Size: 2.79 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
Aniket7651/biosys-net
Bioinformatics package created in C# and python, which can analyze biological data such as DNA, RNA and protein sequences, Biological Databases Scrapping, As well as 'GEO Analysis' offers a variety of analysis on RNA-seq. Preprocessing, parsing various biological file formats (FASTA, PDB, SOFT, FASTQ, etc.), this all using C# language and dotnet.
Language: C# - Size: 6.36 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
shalinis602/RNASeq-GeneExpression-ML
This project aims to identify gene expression patterns associated with different conditions or diseases, leveraging advanced data processing and model training techniques. The analysis includes preprocessing RNA-Seq data, training multiple classifiers, and evaluating their performance to determine the most effective models for such biological data.
Language: Jupyter Notebook - Size: 116 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
thisisyichenzhang/matrix_completion
Scaled matrix completion and cell deconvolution with NanoString data, Yichen Zhang, 2019
Language: R - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sivkri/RBP-Data-Processing
RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.
Language: R - Size: 991 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0