Topic: "mirna-seq"
eandresleon/miARma-seq
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
Language: Perl - Size: 213 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 13 - Forks: 8
sing-group/my-brain-seq
myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry
Language: R - Size: 8.36 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 9 - Forks: 1
HuaZou/bioinformatics_pipeline
Bioinformatics Pipeline
Language: R - Size: 5.73 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 9
hacktrackgnulinux/miranda
[Tools] miRanda: An miRNA target scanner that aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics
Language: C - Size: 1.29 MB - Last synced at: 11 days ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1
CCBR/Pipeliner 📦
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Language: Python - Size: 20.2 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0
OpenOmics/mir-seek
An awesome microRNA-sequencing pipeline
Language: Python - Size: 595 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1
sivkri/small-RNA-Seq-Analysis
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
Language: Shell - Size: 1.71 MB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
jacopo-ronchi/MIRit
An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.
Language: R - Size: 67.5 MB - Last synced at: about 14 hours ago - Pushed at: 26 days ago - Stars: 1 - Forks: 0
vivekruhela/miRSim
miRSim Synthetic Sequence Simulator
Language: Jupyter Notebook - Size: 9.82 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
jcaperella29/MI_RNA_SHINY
Interactive Shiny app for miRNA differential expression analysis, visualization, enrichment, machine learning classification, and power analysis — built for researchers and bioinformaticians
Language: R - Size: 1.63 MB - Last synced at: 17 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
xavierbemo/nf-mirna
This is a complete Nextflow pipeline to analyse, process and align deep sequencing miRNA reads.
Language: Nextflow - Size: 17.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
Mahsa-Ehsanifard/ceRNA-network
multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction
Language: R - Size: 3.69 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
systemPipeR/SPmirnaseq
Workflow Template
Language: TeX - Size: 4.69 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bmunn99/Clemson-Grad-R-scripts
All the R scripts I used during my time as a grad student at Clemson University
Language: R - Size: 60.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
antoniogomez/UVIC_TFM_AGomez_2023
Scripts of Final Master Project
Language: R - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
th789/fflmediation
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
Language: R - Size: 71.7 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
