Topic: "qtl-mapping"
lizhao007/DeepBSA
DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.
Size: 587 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 14 - Forks: 2
YaoLab-Bioinfo/binQTL
QTL mapping with binmap data
Language: R - Size: 983 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 14 - Forks: 2
gabrielgesteira/QTLpoly Fork of guilherme-pereira/QTLpoly
R package for random-effect multiple QTL mapping in autopolyploids
Language: R - Size: 84.2 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 6 - Forks: 3
colbyford/parEBEN
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
Language: C - Size: 107 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
mancusolab/jaxqtl
Flexible, scalable, QTL analyses using generalized linear models implemented in JAX
Language: Python - Size: 225 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 4 - Forks: 0
ladyson1806/SerohijosLab-piQTL
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
Language: Jupyter Notebook - Size: 1.72 GB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 4 - Forks: 1
alethere/mpQTL
github repository for R package mpQTL
Language: R - Size: 587 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0
bredeson/Dioscorea-alata-genomics
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
Language: R - Size: 207 MB - Last synced at: 13 days ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1
fboehm/qtlbim
QTL Bayesian Interval Mapping
Language: R - Size: 19.9 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1
kentavv/mapmaker
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Language: C - Size: 1.44 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1
YaoLab-Bioinfo/binQTL.shiny
GUI for binQTL
Language: R - Size: 1.05 MB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 0
villegar/MetaPipe
MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets
Language: R - Size: 8.25 MB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
ManuelDelpero/AIL_B6xBFMI
Analysis code for AIL B6xBFMI
Language: R - Size: 160 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2
czheluo/Polymap
Pipeline for polymap and QTL Mapping
Language: R - Size: 4.71 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
ramesh8v/chad_db-BRIL
Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
Language: Python - Size: 12.1 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
Biometris/statgenMPP
See https://biometris.github.io/statgenMPP for a full description
Language: R - Size: 11.8 MB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1
matmu/MouseFM
In-silico methods for finemapping of genetic regions in inbred mice
Language: R - Size: 135 KB - Last synced at: 23 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
zjwinn/Winn-Dissertation-Chapter-3
This is the public repository for information related to the thesis chapter of the same name as the title.
Size: 4.64 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
zjwinn/Mapping-of-a-Novel-Major-Effect-Hessian-Fly-Partial-Resistance-Locus-in-Southern-SRWW-LA03136E71
Data repository for the paper of the same name.
Size: 10.1 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
erisemberg/peanut-allergy
This repository contains data and code to reproduce analysis in the manuscript, "A mutation in Themis contributes to peanut-induced oral anaphylaxis in CC027 mice"
Language: R - Size: 74.6 MB - Last synced at: 6 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
arunkumarramesh/Drosophila-genetic-mapping
To map Drosophila melanogaster gene region(s) containing resistance to infection by parasitic wasp Leptopilina boulardi.
Language: R - Size: 57.6 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
antoniogomez/UVIC_TFM_AGomez_2023
Scripts of Final Master Project
Language: R - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
miggyboy96/Brassica-Report-R
Project for my module Big Data Biology.
Language: R - Size: 9.29 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
jlboat/hapmap_to_qtl2
Convert HapMap file into a useable R qtl2 genotype file
Language: Python - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
yassato/rNeighborQTL
To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker analysis to interval mapping.
Language: R - Size: 977 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
ramesh8v/tools
Repository for genomic webapplications served from GitHub pages
Language: JavaScript - Size: 1.41 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
danielalfonsetti/JAXSSP_Aging_Heart
Jackson Labs Summer Student Program 2018, Bar Harbor, ME. Statistically analyzing the effect of genetic diversity on the aging heart. Final paper: https://docs.google.com/document/d/1rkDRjnS6XhkFGk6EpzB4V24XqJdfN_JaM4vh5cc3iBA/edit
Language: R - Size: 268 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
