Topic: "rna-modifications"
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
Language: Python - Size: 5 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 148 - Forks: 23
tleonardi/nanocompore
RNA modifications detection from Nanopore dRNA-Seq data
Language: Python - Size: 138 MB - Last synced at: 21 days ago - Pushed at: over 1 year ago - Stars: 82 - Forks: 13
OpenOmics/modr
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Language: Python - Size: 689 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 1
y9c/cpup
Convert mpileup format to base count tsv table
Language: C++ - Size: 652 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
JiayiLi21/NanoML-5moU
[under review]NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
Language: Jupyter Notebook - Size: 21.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
mevers/RNAModR
Repository for the R package RNAModR
Language: R - Size: 8.49 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 2
GilbertLabUCSF/Decitabine-treatment
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Language: Jupyter Notebook - Size: 3.58 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1
rnabioco/tRNA004
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
Language: Python - Size: 414 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
FelixErnst/Modstrings
:package: Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
Language: R - Size: 681 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
harrlol/hamrtools
handful of tools that might be needed before or after HAMR
Language: R - Size: 4.26 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
harrlol/hamrbox
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
Language: R - Size: 111 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
monimaanam/Modomics_Decoder
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
Language: Python - Size: 33.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
HouyuZhang/MSmodification
An R package for analyzing Mass spectrometry imgaing (MSI) data
Language: R - Size: 265 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
