microarray-data-analysis | Topic

Topic: "microarray-data-analysis"

CCBR/MAAPster

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

Language: R - Size: 50.5 MB - Last synced at: 2 months ago - Pushed at: 10 months ago - Stars: 9 - Forks: 6

eliopato/pylluminator

Python package for processing and analyzing Illumina DNA methylation data

Language: Python - Size: 139 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 0

ahmedmoustafa/gene-expression-datasets

Collection of gene expression datasets

Size: 22.9 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 2

oheil/NormalizeQuantiles.jl

NormalizeQuantiles.jl implements quantile normalization

Language: Julia - Size: 266 KB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 3

tarlaun/BioInf_Project

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

Language: Python - Size: 96.2 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 1

kleelab-bch/phet

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

Language: Python - Size: 23.1 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 3 - Forks: 1

lbulic1003/TumorMicroArr_ML

Tumor Identification Based on Machine Learning Analysis of Microarray Data

Language: Jupyter Notebook - Size: 785 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

harrisgm/GCSscore

Source code and description of GCSscore Package

Language: R - Size: 4.29 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1

ebi-gene-expression-group/selectBCM

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

Language: R - Size: 129 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1

kpatel427/GEOquery-scripts

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

Language: R - Size: 35.2 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 3

Maximvan/AHTAOmicsAnalysisPCOS

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Size: 24.1 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

tiagochavo87/LCSH_analysis

Analysis of long continuous stretches of homozygosity of the human genome.

Language: Jupyter Notebook - Size: 42 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

SamThilmany/microarray-analysis_treatment-kinetics

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

Language: R - Size: 120 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

jckuan/NSCLC-Biomarker-Identification

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

Language: Python - Size: 18.6 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

fhaive/nextcast

Nextcast: a software suite to analyse and model toxicogenomics data

Language: R - Size: 62.3 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

titansarus/Bioinformatics-Microarray-Analysis-AML

Acute Myeloid Leukemia Microarray Analysis

Language: Jupyter Notebook - Size: 11.9 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

kalyaniuniversity/mgx-datasets

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Language: Python - Size: 32 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 2

iampeti/Thesis_Gender_Bias

📊 Investigate gender bias in clinical research through statistical analysis of gene expression differences to improve healthcare outcomes.

Language: R - Size: 6.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

MikelaMiki/Thesis_Gender_Bias

This Repo contains all of the files and the code used in my undergraduate thesis: Gender Bias in Clinical Studies: A Statistical Approach

Language: R - Size: 5.41 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

a-fsh-r/AML_Microarray_Analysis_An_Introduction_to_Bioinformatics_Project

My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).

Language: R - Size: 6.83 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

ShakiraSA/Personal-Project-Investigating-backward-compatibility-of-an-outdated-Affymetrix-pipeline

This repository focused on the usage of a Microarray pipeline called ArrayAnalysis. It is intended to be viewed from the HTML webpage on a computer.

Size: 69.4 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

shussin245/FDR-Hedenfalk-Microarray

Reproducing key findings from Storey and Tibshirani (2003) using preprocessed microarray data to analyze differentially expressed genes (DEGs). Leveraging R and statistical packages to explore the impact of parametric, permutation-based, and rank-based methods on False Discovery Rates.

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Preciousejiba/Identification-of-Biomarkers-for-Early-Stage-Hepatocellular-Carcinoma

"Identification of Biomarkers for Early-Stage Hepatocellular Carcinoma (HCC)" aims to address the critical global challenge of late-stage cancer diagnosis, which significantly lowers patient survival rates. It explores microarray gene expression datasets from GEO to identify potential early-stage biomarkers for improved patient outcomes.

Language: Jupyter Notebook - Size: 2.97 MB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0