biostatistics | Topic | Ecosyste.ms: Repos

Topic: "biostatistics"

BioFSharp/BioFSharp

Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.

Language: F# - Size: 311 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 112 - Forks: 33

ModelOriented/survex

Explainable Machine Learning in Survival Analysis

Language: R - Size: 309 MB - Last synced at: 9 days ago - Pushed at: 10 months ago - Stars: 111 - Forks: 10

Griffan/VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Language: mupad - Size: 69.2 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 89 - Forks: 15

MI2DataLab/survshap

SurvSHAP(t): Time-dependent explanations of machine learning survival models

Language: Jupyter Notebook - Size: 8.99 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 84 - Forks: 16

JB-Statistical-Consulting/biostatistics

Biostatistics resources : reading list, RMarkdown notebooks, and more!

Language: HTML - Size: 7.03 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 70 - Forks: 8

ShixiangWang/Handbook_of_biostatistic_R

:green_book:handbook of biostatistic and R

Language: HTML - Size: 35.4 MB - Last synced at: 4 days ago - Pushed at: over 7 years ago - Stars: 70 - Forks: 24

tlverse/tlverse-handbook

🎯 :closed_book: Targeted Learning in R: A Causal Data Science Handbook

Language: TeX - Size: 56 MB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 57 - Forks: 17

keaven/gsDesign

Group sequential design for clinical trials

Language: R - Size: 288 MB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 51 - Forks: 13

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

Language: R - Size: 4.62 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 39 - Forks: 23

r0f1/sashelp

SAS code snippets

Language: SAS - Size: 87.9 KB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 39 - Forks: 11

raamana/confounds

Conquering confounds and covariates: methods, library and guidance

Language: Python - Size: 27.3 MB - Last synced at: 10 days ago - Pushed at: about 1 year ago - Stars: 38 - Forks: 14

selbouhaddani/OmicsPLS

R package for High dimensional data analysis and integration with O2PLS!

Language: HTML - Size: 31.4 MB - Last synced at: 10 days ago - Pushed at: 22 days ago - Stars: 32 - Forks: 8

stracquadaniolab/pygna

A Python package for gene network analysis

Language: Python - Size: 3.12 MB - Last synced at: 16 days ago - Pushed at: almost 3 years ago - Stars: 32 - Forks: 6

graemeleehickey/joineRML

R package for fitting joint models to time-to-event data and multivariate longitudinal data

Language: R - Size: 8.88 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 30 - Forks: 11

gpaux/Mediana

Clinical Trial Simulations

Language: R - Size: 2.41 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 2

ellessenne/rsimsum

Analysis of simulation studies including Monte Carlo error

Language: R - Size: 68.8 MB - Last synced at: 1 day ago - Pushed at: 11 months ago - Stars: 28 - Forks: 7

aimundo/GAMs-biomedical-research

Repository that contains all the data, code and manuscript files for a paper that explores the use of GAMs in biomedical research.

Language: TeX - Size: 2.34 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 19 - Forks: 5

raamana/missingdata

missing data handing: visualize and impute

Language: Python - Size: 1.52 MB - Last synced at: 10 days ago - Pushed at: over 5 years ago - Stars: 18 - Forks: 1

graemeleehickey/joineR

R package for fitting joint models to time-to-event and longitudinal data

Language: R - Size: 1.49 MB - Last synced at: 28 days ago - Pushed at: 4 months ago - Stars: 17 - Forks: 9

BSEL-UC3M/pMoSS

pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets

Language: Python - Size: 21.1 MB - Last synced at: 29 days ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 5

aejensen/TrendinessOfTrends

The Trendiness of Trends

Language: TeX - Size: 86.5 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 15 - Forks: 2

vubiostat/ps

Power and Sample Size Calculation

Language: Visual Basic 6.0 - Size: 56.5 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 14 - Forks: 3

simonguld/CellSegmentationTracker

A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy

Language: Jupyter Notebook - Size: 1.8 GB - Last synced at: 5 minutes ago - Pushed at: about 1 hour ago - Stars: 13 - Forks: 2

lebinary/genome-browser

Genome browser to visualize and analyze genomic data

Language: JavaScript - Size: 2.37 MB - Last synced at: 2 days ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 2

mikeroyal/Biostatistics-Guide

Biostatistics Guide

Size: 128 KB - Last synced at: 24 days ago - Pushed at: almost 4 years ago - Stars: 10 - Forks: 5

hruffieux/locus

locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression

Language: R - Size: 1.03 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2

SchmidtPaul/DSFAIR

:bar_chart::seedling: Data Science for Agriculture in R

Language: HTML - Size: 25.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 2

stracquadaniolab/baghera

Bayesian Gene Heritability Analysis from GWAS summary statistics

Language: Python - Size: 240 KB - Last synced at: 16 days ago - Pushed at: about 3 years ago - Stars: 9 - Forks: 0

ucla-biostat-212a/2024winter

Course webpage for UCLA Biostat 212A (Statistical Machine Learning A)

Language: HTML - Size: 135 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 0

CSBiology/TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

Language: F# - Size: 10.6 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 3

Helmut01/replicateBE

Comparative BA-calculation for the EMA's Average Bioequivalence with Expanding Limits (ABEL)

Language: R - Size: 2.35 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 3

vanderLaan-Group/vanderLaan-lab.org

Website and blog for the research group of Mark J. van der Laan

Language: HTML - Size: 24.8 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 8 - Forks: 2

giupardeb/EpiMethEx

EpiMethEx (Epigenetic Methylation and Expression), a R package to perform a large-scale integrated analysis by cyclic correlation analyses between methylation and gene expression data.

Language: R - Size: 227 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 0

KarlaMonterrubioG/CompRisksVignettes

Supplementary material for the paper: A review on competing risks methods for survival analysis

Language: HTML - Size: 16.7 MB - Last synced at: 5 months ago - Pushed at: 10 months ago - Stars: 7 - Forks: 2

lhelal1/CAR00110-2023

CAR00110-2023: Bioestatística Aplicada em Linguagem R (PPG Cardiologia, UFRGS). Regente: Prof. Dr. Lucas Helal | [email protected]

Size: 1.94 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 6

aysuvorov/medstats

Collection of scripts and modules for biostatistics and data science simple automation for research process.

Language: Jupyter Notebook - Size: 11.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 6 - Forks: 2

ucla-biostat-203b/2024winter

Language: HTML - Size: 180 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 3

SACEMA/inctools

Incidence Estimation Tools

Language: R - Size: 12.1 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 4

wtwt5237/raku-for-bioinformatics

Raku/Perl6 resources for bioinformatics

Language: Raku - Size: 5.3 MB - Last synced at: 16 days ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 2

tlverse/sl3_lecture 📦

:notebook: 💪 An introductory workshop lecture on ensemble machine learning with pipelines using the sl3 R package

Language: JavaScript - Size: 842 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 5

vanderLaan-Group/tlbbd-sp2018 📦

Course website for "Targeted Learning in Biomedical Big Data" (Spring 2018, UC Berkeley)

Language: Shell - Size: 6.28 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 6 - Forks: 1

kaz-yos/mw

Simulation scripts for matching weights in three-group studies (Epidemiology 2017)

Language: HTML - Size: 76.3 MB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 6 - Forks: 3

DanuserLab/u-integrate

Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia

Language: MATLAB - Size: 1.81 GB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 5 - Forks: 1

hikarimusic/BIOSTATS

An Intuitive App for Statistical Analysis

Language: Python - Size: 43.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

ucla-biostat-203b/2023winter

Course webpage for UCLA Biostat 203B (Intro. to Data Science)

Language: HTML - Size: 100 MB - Last synced at: 22 days ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 0

statbiscuit/vested

Virtual Experiments to Teach Experimental Design

Language: R - Size: 25.2 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 2

nhejazi/biotmle

:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery

Language: R - Size: 120 MB - Last synced at: 1 day ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 2

SchmidtPaul/crashcouRse

:chart_with_downwards_trend::seedling: R für Bio- und Agrarwissenschaftler

Language: HTML - Size: 16.4 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

areyesq89/HumanTissuesDEU

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

Language: HTML - Size: 6.69 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 3

ekstroem/MESS

Miscellaneous Esoteric Statistical Scripts - an R package

Language: R - Size: 8.18 MB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 4 - Forks: 9

carlosproca/cdnormbio

R package: Condition-Decomposition Normalization for Biological Applications

Language: R - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 4 - Forks: 2

LeandroD94/Papers

Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file

Language: R - Size: 35.8 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 3 - Forks: 0

aldojacopovirno/HybridHeartClassifier

HybridHeartClassifier is an advanced R-based framework for heart disease classification and prediction, integrating statistical and machine learning approaches. This hybrid model combines ordinal regression with XGBoost for accurate classification and severity prediction, while offering extensive ROC analysis and statistical testing.

Language: R - Size: 591 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 0

dvklopfenstein/goatools_simulation

Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations

Language: Python - Size: 92.4 MB - Last synced at: about 6 hours ago - Pushed at: 7 months ago - Stars: 3 - Forks: 1

sarahkaspar/biostatistics-course

Lesson on statistical distributions in biology

Language: R - Size: 5.23 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 1

stopsack/risks

risks: R package for estimating risk ratios and risk differences using regression

Language: R - Size: 7.27 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

nripstein/Heart-Disease-Prediction

Heart Disease Prediction Machine Learning Project

Language: Jupyter Notebook - Size: 19.5 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 2

Sarah-Hesham-2022/Bio-Statistics-R-Coding-On-Datasets-Analysis-and-Plotting

Appling R coding on the medical data from a given file data.csv, which is a dataset of a patient demographic containing standard information regarding individuals from a variety of ancestral lines.

Language: R - Size: 439 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0

ucla-biostat-216/2022fall

course webpage for UCLA Biostat 216, 2022 Fall Quarter

Language: Jupyter Notebook - Size: 19.4 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

AntoineSoetewey/yll

R Package Hosted on CRAN to Compute Expected Years of Life Lost (YLL) and Average YLL. See https://CRAN.R-project.org/package=yll

Language: R - Size: 15.6 KB - Last synced at: 21 days ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

Kur1sutaru/statistic4dummiesinR

A compilation of statistical analyses and code with exercises in the R language

Language: R - Size: 78.1 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

himelmallick/awesome_datascience_travel_grants

A curated list of early career data science student paper awards and travel grants.

Size: 5.86 KB - Last synced at: 9 days ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

nhejazi/methyvim 📦

:package: :microscope: R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis

Language: TeX - Size: 4.99 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

philsf/Bioestatistica

Disciplina Bioestatística (Mestrado)

Language: TeX - Size: 90.9 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

FluSightNetwork/FSN-Model-Comparison

Shiny app for FSN model comparison

Language: R - Size: 42.6 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 2

wyp1125/SAS-Biostat-Tools

SAS scripts for various biostatistics applications. A complete pipeline for analyzing microarray data using linear models is included.

Language: SAS - Size: 218 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 3

xmlyqing00/SparseTensorRegression

This repository implements the core function of paper "Sparse Multi-Response Tensor Regression for Alzheimer's Disease Study With Multivariate Clinical Assessments".

Language: Matlab - Size: 67.1 MB - Last synced at: about 1 month ago - Pushed at: almost 8 years ago - Stars: 3 - Forks: 4

wnarifin/wnarifin.github.io

wnarifin.github.io hosts my lectures, files and R codes.

Language: HTML - Size: 60.5 MB - Last synced at: about 15 hours ago - Pushed at: about 16 hours ago - Stars: 2 - Forks: 5

LyonsZhang/CINEMA-Group

The CINEMA Group is a newly established research group focused on the intersection of clinical informatics, neuroimaging, and multiomics. Our goal is to develop innovative solutions for understanding human health and disease using advanced statistical and computational methods.

Language: TeX - Size: 83.1 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

UCLA-MDSH/ucla-mdsh.github.io

website for UCLA Master of Data Science in Health (MDSH) program

Language: JavaScript - Size: 36.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

USCbiostats/LAsBEST

Repository of USC's LA's BEST program. https://lasbest.usc.edu/

Language: HTML - Size: 301 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 5

himelmallick/Bayes_Review_ASA_BIOP

This repository houses all the analysis codes described in the Bayesian nonclinical review paper published in Communications in Statistics – Case Studies and Data Analysis.

Language: HTML - Size: 58.6 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

Fuzzy-sh/Machine-Learning-Risk-Estimation-ARC

Python codes for administrative data (long term care) residents- Odds ratio-Logistic regression-ML models

Language: Jupyter Notebook - Size: 2.51 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

alexmclain/Biostatistics-835

Biostatistical Machine Learning for Public Health

Language: R - Size: 45.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

GegznaV/biostat

:warning: Convenience functions for biostatistical analysis (R package)

Language: HTML - Size: 12.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

maxbiostat/npowerPrioR

Code for sampling from an approximate normalised power posterior using Stan.

Language: R - Size: 47.9 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

Sarah-Hesham-2022/BioStatistics-R-Coding-Using-Dataset-AntiProfilesData

Bio Statistics R Coding Using Dataset AntiProfilesData Genomics Data Structure Processing.

Language: R - Size: 259 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

gabboraron/orvosi_vizsgalatok_kiertekelesenek_mernokinformatikai_alapjai

Az orvosi informatika alapfogalmai

Language: TeX - Size: 17.4 MB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2

marcosvital/scriptsR

Scripts de disciplinas, cursos e avulsos, ligados ou não ao Cantinho do R

Language: HTML - Size: 10 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 7

UMCPredictionMeetings/UMCPredictionMeetings.github.io

Prediction Meetings hosted by UMC Utrecht Julius Center

Language: SCSS - Size: 1.97 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

ericwanghu/ghedproject.github.io

Columbia University P8105 Project

Language: HTML - Size: 90.6 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

umr1283/docker_biostatistics 📦

UMR1283 Biostatistics Docker Image

Language: Perl - Size: 177 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

THOMASELOVE/431-2020-notes

Old (2020) Data Science for Biological, Medical and Health Research: Notes for PQHS/CRSP/MPHP 431

Language: TeX - Size: 53.6 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 2

Kin-Wang/EPI_Shelves

Something about epi methods, biostats, infectious diseases

Language: R - Size: 2.96 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

krashr-ds/biostats-sas-r

SAS and R code for Introductory Applied Biostatistics

Language: SAS - Size: 13.6 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

ohsu-knight-cancer-biostatistics/reproducible-research

Resources for reproducible research.

Language: HTML - Size: 18.9 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 4

brouwern/BIOSC_1120

Course website for BIOSCI 1120: Biostatistics at the University of Pittsburgh Department of Biological Sciences

Language: HTML - Size: 2.84 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1

odeibarredo/Statistics_Group-Comparisons

Statistical analysis comparing metal accumulation levels in three macroinvertebrate groups

Language: R - Size: 687 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1

Zepeng-Mu/BiostatisticsCourse

Language: R - Size: 1.05 MB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 2

BerkeleyBiostats/berkeleybiostats.github.io

UC Berkeley Biostats Software Community Homepage

Language: HTML - Size: 248 KB - Last synced at: about 1 year ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 0

kyegomez/Chai-1

An free and open source community implementation of Chai-1 in PyTorch

Language: Python - Size: 2.16 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0

sbalci/ClinicoPathDescriptives

ClinicoPath jamovi module Descriptives

Language: R - Size: 7.07 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 2

laura-budurlean/Drug-Discovery-with-Python-and-Machine-Learning

Explore data collection, analysis, and machine learning for drug discovery. Create predictive models, perform EDA, and deploy as web apps.

Size: 1.02 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

bradduthie/stats

Complete introductory statistics textbook with an emphasis on the biological & environmental sciences. Includes 26 chapters introducing key concepts for a foundational understanding of statistics and 9 complementary chapters of exercises with jamovi. Supplemental shiny apps illustrate book concepts. All code and datasets are freely available.

Language: HTML - Size: 343 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 1