stefpeschel/NetCoMi

Network construction, analysis, and comparison for microbial compositional data

Language: R - Size: 252 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 167 - Forks: 29

meringlab/FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

Language: Julia - Size: 1.31 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 84 - Forks: 8

JuliaEarth/CoDa.jl

Compositional data analysis in Julia

Language: Julia - Size: 292 KB - Last synced at: 15 days ago - Pushed at: 3 months ago - Stars: 61 - Forks: 8

boehm-s/fun-php

Functional programming utilities for PHP

Language: PHP - Size: 979 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 29 - Forks: 2

Vision-CAIR/3DCoMPaT

Official repository for the 3DCoMPaT dataset (ECCV2022 Oral)

Language: Jupyter Notebook - Size: 192 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 1

ofgulban/compoda

Simplex space operations for compositional data implemented in Python.

Language: Python - Size: 442 KB - Last synced at: 14 days ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 0

simhag/Compositional-Pre-Training-for-Semantic-Parsing-with-BERT

Implementation of Semantic Parsing with BERT and compositional pre-training on GeoQuery

Language: Scala - Size: 84.6 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 11 - Forks: 5

mcomas/codapack

Language: Java - Size: 68 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 10 - Forks: 3

lch14forever/beem-static

📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

Language: R - Size: 5.15 MB - Last synced at: 5 days ago - Pushed at: almost 4 years ago - Stars: 9 - Forks: 8

Japal/zCompositions

Imputation of zeros, nondetects and missing data in compositional data sets

Language: R - Size: 325 KB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 7 - Forks: 1

nphdang/DeepCoDA

Deep learning for personalized interpretability for compositional health data

Language: Python - Size: 10.8 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 1

tesselle/nexus

Sourcing Archaeological Materials by Chemical Composition - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/nexus

Language: R - Size: 1.95 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 0

tystan/simplexity

Hopefully taking out the complexity of using the simplex: functions to generate, manipulate and plot data on the simplex

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mpascariu/CoDa

Forecast mortality using Compositional Data Lee-Carter model - R Package

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avisionh/analysis-structuralbreak

Practical introduction to modelling and testing for structural breaks in time-series data.

Size: 2.07 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 1

bio2ds-ucm/bio2ds-ucm

Biomedicine Data Science and Biostatistics - UCM bio2ds-ucm · they/them This is the Github repo of the Biomedicine Data Science and Biostatistics research group at Complutense University

Language: R - Size: 10.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 3

ajmolstad/SpPDCC

R package for estimating sparse and positive definite basis covariance matrices from compositional data

Language: R - Size: 164 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

seungwoo-stat/20th-PE-forecast

Forecasting the four-party vote share of the 20th presidential election of Republic of Korea

Language: R - Size: 16.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

FrederickHuangLin/SECOM-Code-Archive

Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.

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kkdey/dashr

R package for Dirichlet adaptive shrinkage and smoothing

Language: R - Size: 12.8 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 2

kkdey/dash 📦

Dirichlet adaptive shrinkage for compositional data

Language: R - Size: 5.6 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

cran-task-views/CompositionalData

CRAN Task View: Compositional Data Analysis

Size: 236 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

mspreafico/BO06-LOTox

Longitudinal Latent Overall Toxicity (LOTox) profiles in osteosarcoma: a new taxonomy based on latent Markov models.

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lm687/CompSign

CompSign: An R package for differential abundance of compositional mutational signatures

Language: R - Size: 109 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

dadosdelaplace/dadosdelaplace

About me: mathematician, PhD Stats, Assistant Professor and scicomm

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SamGalanakis/SimilarSummonersGraph

Using champion mastery data from Rot games API to visualize champion connections based on correlation metrics of compositional data in a network. Unsupervised learning was also used to categorize the champions. Lastly, weighted graph distance was used to make a recommender system for new champions based on played chamoions input.

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seungwoo-stat/south-korea-election

Presidential election data set from South Korea

Language: R - Size: 965 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

nfrerebeau/TaphoCeram

Replication of Frerebeau, N., Ben Amara, A. and Cantin, N. (2020)

Language: TeX - Size: 257 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

andyphilips/dynsimpie

Stata module to examine dynamic compositional dependent variables

Language: Stata - Size: 489 KB - Last synced at: 11 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

fpavone/pacs_spline_density

splineDensity Rpackage: Density estimation with smoothing B-spline

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jhhughes256/comp_app

Web applications for use with compositional data. Post-graduate work for Dr. Dot Dimuid and Prof. Timothy Olds at University of South Australia.

Language: R - Size: 68.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0