evotools/nf-LO

A Nextflow workflow to generate lift over files for any pair of genomes

Language: Nextflow - Size: 19.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 66 - Forks: 10

Midnighter/nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

Language: Shell - Size: 707 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 37 - Forks: 9

mahesh-panchal/nf-cascade

A proof of concept daisy-chaining Nextflow workflows

Language: Nextflow - Size: 49.8 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 27 - Forks: 8

peterk87/sublime-nextflow

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Language: Python - Size: 667 KB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 24 - Forks: 7

BU-ISCIII/nextflow-scif

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Language: HTML - Size: 9.7 MB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 1

nf-core/sublime Fork of peterk87/sublime-nextflow

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Language: Python - Size: 654 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 6 - Forks: 4

CFSAN-Biostatistics/nowayout

nowayout is a super-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.

Language: Nextflow - Size: 13.3 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

IdoBar/nf-taxblast

A Nextflow workflow for scalable distributed taxonomy-enabled NCBI Blast and Diamond homology searches

Language: Nextflow - Size: 45.9 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

JBris/nextflow-tutorials

Working through NextFlow tutorials. See https://github.com/nextflow-io/training

Language: HTML - Size: 2.57 MB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

olgabot/nf-kmer-similarity Fork of nf-core/kmermaid

Language: Nextflow - Size: 8.54 MB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

AAFC-Bioinfo-AAC/metagenomics-nf

A Nextflow shotgun metagenomics pipeline with Illumina reads. / Pipeline Nextflow de métagénomique de type shotgun avec des séquences Illumina.

Language: Nextflow - Size: 5.56 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

rajanbit/Bioinfo_nf_Scripts

Nextflow Scripts/Workflows for Bioinformatics

Language: Nextflow - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

manuelesimi/hello-nextflow

A simple pipeline to test some basic nextflow features.

Language: Nextflow - Size: 115 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0