Topic: "singularity-containers"
nextflow-io/nextflow
A DSL for data-driven computational pipelines
Language: Groovy - Size: 58.5 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 2,930 - Forks: 684
singularityhub/sregistry
server for storage and management of singularity images
Language: JavaScript - Size: 16.1 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 104 - Forks: 42
singularityhub/singularityhub.github.io
Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs
Language: HTML - Size: 3.47 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 69 - Forks: 9
singularityhub/singularity-python
command line tool for working with singularity hub and singularity containers
Language: Python - Size: 24.5 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 41 - Forks: 11
comorment/containers
CoMorMent-Containers
Language: R - Size: 25.2 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 28 - Forks: 11
NIH-HPC/singularity-examples
example singularity definition files and demos
Language: Shell - Size: 17.6 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 25 - Forks: 11
intel/HPC-containers-from-Intel 📦
Intel HPC Containers using Singularity
Size: 13.9 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 11
c3se/containers
The main platform for sharing all the information about AI/HPC-related containers at C3SE. See also the included tutorial to get started.
Size: 243 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 16 - Forks: 0
sci-f/sci-f.github.io
The Scientific Filesystem Specification and Documentation
Language: CSS - Size: 6.64 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 6
singularityhub/stools
singularity container tools for continuous integration and quality assessment
Language: Python - Size: 174 KB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 2
CDAC-SSDG/hpc-containers
This repo holds the containers for HPC applications used and deployed by CDAC SSDG. It is a single point of contact for the container related issues or support required
Size: 27.3 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 0
BU-ISCIII/nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Language: HTML - Size: 9.7 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 9 - Forks: 3
vsoch/singularity-scientific-example Fork of cjprybol/singularity-testing
example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers
Language: Jupyter Notebook - Size: 2.37 MB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 9 - Forks: 2
jlboat/BioinfoContainers
Various Singularity recipes I've used to generate containers
Size: 41 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 3
supercontainers/sc19-tutorial
Getting Started with Containers on HPC
Language: C - Size: 103 MB - Last synced at: 29 days ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 2
QuentinLetourneur/Let-it-bin
Optimize workflow for binning metagenomic short reads from multiple samples
Language: Nextflow - Size: 193 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 2
telatin/singularities
Scripts and notes for singularity containers used for bioinformatics analyses
Language: Perl - Size: 50.8 KB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1
asadprodhan/sangerFlow
A bioinformatics pipeline that automates the Sanger amplicon sequencing data analysis of thousands of samples in parallel.
Language: Nextflow - Size: 1.16 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 3 - Forks: 0
sci-f/apps
Modular application recipes for the Scientific Filesystem (SCIF)
Language: CSS - Size: 3.18 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 3
kinow/cylc-singularity
Singularity containers for Cylc
Language: Roff - Size: 3.91 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1
vsoch/singularity-nginx
web application to serve (simple) singularity images
Language: Python - Size: 228 KB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 3 - Forks: 0
tensoralex/apptainer-fastai-container
A short tutorial on building an Apptainer image for fast.ai course/book
Language: Shell - Size: 130 KB - Last synced at: 4 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1
manuparra/cc2122
Cloud computing How-To
Language: Shell - Size: 2.69 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 15
singularityhub/singularity-tunel
command line tool for general HPC functions using Singularity containers
Language: CSS - Size: 1.39 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
singularityhub/builders
these are the build scripts run by the robot builders, chosen by the user for a given build
Language: CSS - Size: 677 KB - Last synced at: about 2 months ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 0
PSU-ICDS/containers
A collection of Dockerfiles and Singularity definition files used to build the containers that are used on the Roar cluster!
Language: Dockerfile - Size: 72.8 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
pranjaldhole/singularity-cellprofiler
Singularity-based linux container with CellProfiler 4 pre-installed into it.
Language: Shell - Size: 13.7 KB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
JFresnedo/AmpSeq
A framework for semi-automated analysis of Amplicon Sequencing data
Language: Perl - Size: 331 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 4
singularityware/eb-singularity Fork of easybuilders/eb-singularity
Stuff related to integrating EasyBuild & Singularity
Size: 7.81 KB - Last synced at: 5 months ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0
pmitev/Teoroo-singularity
Singularity images and recipes
Language: JavaScript - Size: 5.38 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
AndreVale69/SE4HPC_project_part2
Second (part 2) university project of the Software Engineering for HPC course.
Language: C++ - Size: 235 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
nr23730/singularity-docker 📦
Build and run singularity images within a Docker container.
Language: Dockerfile - Size: 5.86 KB - Last synced at: about 16 hours ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
nosolls/geos-singularity
Singularity containers for using GEOS fixtures.
Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
horothesun/singularity-conda-multiple-envs
Singularity containerization of a Conda-based multi-environment bash script.
Language: Shell - Size: 44.9 KB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
Grelot/bioinfo_singularity_recipes
A collection of singularity recipies for bioinformatic pipelines.
Language: Shell - Size: 2.52 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
vistle/singularity
Singularity containers for running COVISE, OpenCOVER, and Vistle
Language: Makefile - Size: 30.3 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
twesterhout/primme-singularity
Singularity container for PRIMME (PReconditioned Iterative MultiMethod Eigensolver) library
Size: 1000 Bytes - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
SouthGreenPlatform/singularityRecipeFiles
This repository provides a series of Singularity recipe files used to easily deploy numerous bioinformatics softwares through containers.All these Singularity recipes are ready to be used by the bioinformatics community and have been developed to be integrated into the workflow manager TOGGLe http://toggle.southgreen.fr.
Size: 19.5 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
JayjeetAtGithub/actions
Singularity Actions
Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
maxulysse/Presentations
My presentations made with compile-latex
Language: TeX - Size: 91.4 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
Smahane/HPC-Container
Some HPC Singularity containers
Language: Shell - Size: 60.4 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
sci-f/flavours-of-physics.scif
containers-ftw version of https://www.kaggle.com/c/flavours-of-physics
Language: Python - Size: 94.7 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
ArangoGutierrez/singularity-builder Fork of singularityware/singularity-builder
Singularity builder to build, install, and update Singularity software on different platforms
Language: Shell - Size: 53.7 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
researchapps/graspit
singularity image for graspit with python 3
Language: Shell - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
singularityhub/neurodebian
Singularity Images for neurodebian
Size: 23.4 KB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
researchapps/opensees
Singularity image for (last working verison) of OpenSees
Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0