sge | Topic | Ecosyste.ms: Repos

Topic: "sge"

nextflow-io/nextflow

A DSL for data-driven computational pipelines

Language: Groovy - Size: 58.6 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 2,946 - Forks: 687

implus/PytorchInsight

a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

Language: Python - Size: 5.09 MB - Last synced at: 10 months ago - Pushed at: over 4 years ago - Stars: 857 - Forks: 122

mlr-org/batchtools

Tools for computation on batch systems

Language: R - Size: 5.69 MB - Last synced at: about 3 hours ago - Pushed at: 12 days ago - Stars: 180 - Forks: 51

mschubert/clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

Language: R - Size: 6.28 MB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 150 - Forks: 28

futureverse/future.batchtools

:rocket: R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools

Size: 2.1 MB - Last synced at: 15 days ago - Pushed at: about 2 months ago - Stars: 85 - Forks: 9

Ensembl/ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

Language: Perl - Size: 71.4 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 50 - Forks: 28

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:

Language: Python - Size: 2.49 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 41 - Forks: 23

datasnakes/OrthoEvolution

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Language: Python - Size: 40.6 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 28 - Forks: 4

pyiron/pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

Language: Python - Size: 1.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 27 - Forks: 8

GarrettJenkinson/informME

An information-theoretic pipeline for methylation analysis of WGBS data

Language: MATLAB - Size: 7.78 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 24 - Forks: 9

baiyongan/lsf-handbook

IBM LSF manual translation and practical experience

Language: HTML - Size: 33.8 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 18 - Forks: 5

FlyPythons/DAGflow

Module to create DAG Task and Manage Task on SGE

Language: Python - Size: 41 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 18 - Forks: 5

HECBioSim/Longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

Language: Python - Size: 7.99 MB - Last synced at: 17 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 3

relleums/qstat

parse Grid Engine qstat job info list into a list of python dicts

Language: Python - Size: 35.2 KB - Last synced at: 13 days ago - Pushed at: about 3 years ago - Stars: 12 - Forks: 3

yodeng/runjob

runjob is a program for managing a group of related jobs running on a compute cluster

Language: Python - Size: 1.19 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 10 - Forks: 4

dgruber/jsv

Grid Engine JSV (Job Submission Verifier) implementation for Go (#golang).

Language: Go - Size: 35.2 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 10 - Forks: 7

zenotech/MyCluster

Utilities to support interacting with multiple HPC clusters

Language: Python - Size: 362 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 2

Adigorla/xgap

xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.

Language: Python - Size: 113 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 2

HenrikBengtsson/future.clustermq

:rocket: R package future.clustermq: A Future API for Parallel Processing using 'clustermq'

Language: R - Size: 24.4 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 2

HenrikBengtsson/future.BatchJobs

:rocket: R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]

Language: R - Size: 741 KB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0

canarydev/SGE

Sistema de Gestión Empresarial 📊 | Odoo | Lecciones y recursos educativos

Language: Shell - Size: 14.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 2

zengxiaofei/PJM

A simple job manager for PBS (Portable Batch System)

Language: Python - Size: 34.2 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 7 - Forks: 0

fieldtrip/qsub

This repository contains a subset of the FieldTrip code related to distributed computing

Language: MATLAB - Size: 353 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 6 - Forks: 1

zengxiaofei/snodes Fork of FrasergenBioinformatics/SGE-scripts

Some scripts for managing nodes and jobs on SGE

Language: Python - Size: 131 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 6 - Forks: 0

CarragherLab/cptools2

Running cellprofiler on eddie3 / SGE clusters

Language: Python - Size: 543 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 5

hpc-gridware/go-clusterscheduler

Simple Go API wrapping Open Cluster Schedulers cli

Language: Go - Size: 7.8 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 4 - Forks: 0

datasnakes/htseq-count-cluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

Language: Python - Size: 71.3 KB - Last synced at: 19 days ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

NYU-Molecular-Pathology/util

Utility modules for Python

Language: Python - Size: 185 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 2

indigo-dc/bdocker 📦

Execution and management of Docker containers in batch systems.

Language: Python - Size: 2.69 MB - Last synced at: 9 months ago - Pushed at: about 8 years ago - Stars: 4 - Forks: 0

TheRoddyWMS/BatchEuphoria

A library to access different kinds of cluster backends

Language: Groovy - Size: 1.53 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 5

prod-feng/sge-gpu

Patch files for SGE, Grid Engine, built-in support for multiple GPUs scheduling, set CUDA_VISIBLE_DEVICES for jobs, no load sensor needed

Size: 52.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

jrhawley/Terminal 📦

Custom terminal setup for Linux and Mac

Language: Shell - Size: 149 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 1

UCL/GERun

A wrapper for the various MPI implementations on Legion to abstract them so that users don't need to know all the options.

Language: Shell - Size: 33.2 KB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 2

yodeng/qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option

Language: Python - Size: 5.86 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

aeszter/qview

Web-based front-end for Slurm or Grid Engine

Size: 1.58 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

alichry/sge-utils

Easily submit and query output of HPC jobs (MPI, SMP) using predefined templates and helpers in (Son of) Grid Engine.

Language: Shell - Size: 70.3 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1

efcaguab/sge-workshop

A workshop: using High Performance Computing at the University of Canterbury

Language: R - Size: 15 MB - Last synced at: 7 months ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 3

paultsw/mnist_mpi

Proof-of-concept, MPI-based distributed training of a neural network on SGE HPCs.

Language: Python - Size: 4.88 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 1

datasnakes/qsubmitter Fork of zachary-foster/qsubmitter

An R package to submit arbitrary jobs to a remote SGE cluster

Language: R - Size: 31.3 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

stevekm/docker-centos6-sge

Docker container with CentOS6 & SGE installed

Language: Shell - Size: 26.4 KB - Last synced at: 3 months ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 0

Kauanrodrigues01/sge

SGE (Sistema de Gestão de Estoque) que gerencia produtos, fornecedores, marcas, categorias, entradas e saídas de estoque. Envia notificações automáticas por WhatsApp e e-mail ao administrador sobre movimentações e alertas de baixo estoque. Integrado com IA, oferece sugestões de reposição e insights para otimizar a gestão de estoque.

Language: Python - Size: 201 KB - Last synced at: 15 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

estivenm0/sge

sistema de gestión de empleados

Language: PHP - Size: 1.63 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

Forwardspace/SGE

An easy to use OpenGL game engine!

Language: C++ - Size: 47.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

Ensembl/ensembl-hive-sge

SGE Meadow for Ensembl Hive

Language: Perl - Size: 77.1 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

dmetivie/Robust-Randomized-Quasi-Monte-Carlo-paper-code

Code of the paper The Robust Randomized Quasi Monte Carlo method, applications to integrating singular functions by E. Gobet M. Lerasle and D. Métivier

Language: HTML - Size: 1010 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

scisweeper/scisweeper

scisweeper - scientific parameter sweeper, with easy debugging capabilities and an interface for most scientific queuing systems.

Language: Python - Size: 88.9 KB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

Sparrow0hawk/sagitta

🦀 A Rust SGE qacct clone

Language: Rust - Size: 44.9 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

prod-feng/SGE-QRSH-Wraper

qrsh,sge

Language: Shell - Size: 9.77 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

prod-feng/SGE-Shepherd-CGroup

Bash Script wrapper for Shepherd Dameon, set CGroup rule to control job's RAM and CPU usage

Language: Shell - Size: 17.6 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

alichry/simple-hpcluster

Quickly deploy a multi-user High Performance Computing cluster on AWS using ParallelCluster.

Language: Shell - Size: 43.9 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

BU-ISCIII/exome_pipeline

Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.

Language: Shell - Size: 199 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

jackdeadman/sge-experiment-runner

Tool to generate SGE scripts based on an experiment config

Language: Python - Size: 11.7 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

mkofinas/cheatsheets

Command line cheatsheets

Size: 2.93 KB - Last synced at: 7 days ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

IBIC/rmake

Running make on an SGE

Language: Shell - Size: 164 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

willem4/sge_tools

Tools for parsing sun grid engine logging files

Language: Python - Size: 1.95 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

stevekm/docker-sge Fork of gawbul/docker-sge

Dockerfile to build a container with SGE installed

Language: Shell - Size: 38.1 KB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1