bioinformatics-data | Topic | Ecosyste.ms: Repos

Topic: "bioinformatics-data"

nicgirault/circosJS

d3 library to build circular graphs

Language: JavaScript - Size: 7.25 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 509 - Forks: 116

kmhernan/awesome-bioinformatics-formats

Curated list of bioinformatics formats and publications

Size: 72.3 KB - Last synced at: 9 days ago - Pushed at: about 6 years ago - Stars: 53 - Forks: 4

MultiQC/test-data

Test data for MultiQC.

Language: HTML - Size: 152 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 22 - Forks: 143

jithin8mathew/Protein-feature-extraction

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Language: Python - Size: 1.56 MB - Last synced at: 9 days ago - Pushed at: about 3 years ago - Stars: 19 - Forks: 2

nilesh-tawari/ChronQC

Manuscript describing ChronQC is now available online in Bioinformatics

Language: HTML - Size: 39.3 MB - Last synced at: 7 days ago - Pushed at: almost 6 years ago - Stars: 18 - Forks: 8

mhtjsh/Bioinformatics_Algorithms

I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python

Language: Python - Size: 76.2 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 16 - Forks: 2

genouest/biomaj

BioMAJ

Language: Python - Size: 5.04 MB - Last synced at: 10 days ago - Pushed at: 7 months ago - Stars: 12 - Forks: 10

cancervariants/therapy-normalization

Services and guidelines for normalizing drug and other therapy terms

Language: Python - Size: 3.31 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 11 - Forks: 3

BioJulia/ReadDatastores.jl

Datastores for reads, not your papa's FASTQ files.

Language: Julia - Size: 618 KB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 4

Bio2Byte/public_notebooks

Repository of Jupyter Notebooks created by the Bio2Byte group

Language: Jupyter Notebook - Size: 1.18 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 9 - Forks: 0

BD2KGenomics/bioapi-examples

Code examples for working with web based bioinformatics APIs

Language: Jupyter Notebook - Size: 2.12 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 9 - Forks: 9

gversmee/dbgap2x

Language: Jupyter Notebook - Size: 8.58 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 7

maitreyeepaliwal/Alleropedia-Database-for-Allergens

Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.

Language: HTML - Size: 994 KB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 0

FatemehGholamzadeh/BWT-on-Gene-Sequence

implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019

Language: Python - Size: 1.44 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

emir-munoz/adr-prediction

Supplemental material for the paper "Facilitating Prediction of Adverse Drug Reactions by Using Knowledge Graphs and Multi-Label Learning Models".

Language: CSS - Size: 11.7 KB - Last synced at: 19 days ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 3

karthiksoman/biomixQA

Repository for BiomixQA benchmark dataset

Language: Jupyter Notebook - Size: 13.7 KB - Last synced at: 12 days ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0

BioAnalyticResource/ePlant_Plant_eFP

A data visualization tool to display tissue expression data for Arabidopsis thaliana

Language: JavaScript - Size: 6.32 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

gkoulouras/seq-sec-ratio

A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

Language: Visual Basic - Size: 812 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 3 - Forks: 0

fg6/YeastStrainsStudy

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.

Language: Shell - Size: 561 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 5

biowdl/biowdl-test-data

Reproducible and reusable test data for bioinformatics projects.

Language: Python - Size: 63.3 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1

ggirelli/bioTrackBinner 📦

Binning biological data tracks and producing RDS containing data.tables

Language: R - Size: 45.9 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

Nekose/ICAP_Crawler

A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.

Language: Python - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

gpiemont/pyeutils

Python interface to NCBI Eutils

Language: Python - Size: 319 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

bioinfweb/JPhyloIO

A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

Language: Java - Size: 8.06 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

JFresnedo/AmpSeq

A framework for semi-automated analysis of Amplicon Sequencing data

Language: Perl - Size: 331 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 4

hannahpersampieri/Microbiome-graph Fork of BioSeq/Microbiome-graph

Produces a network of given microbiome data

Language: Python - Size: 277 KB - Last synced at: 4 months ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0

IBCHgenomic/BIGG-metabolic-analyzer-API

a API to BIGG metabolic databases

Language: Python - Size: 189 KB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

IBCHgenomic/genomeassembly-pacbiohifi

pacbioHifi genome assembly benchmarks

Language: HTML - Size: 75.3 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 0 - Forks: 1

V-Z/hybseq-course

Materials for course about processing HybSeq data on computing grids

Language: TeX - Size: 1.63 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

sensodevices/motor-skills-rehab-research-kit

Contains a sample dataset with rehab sessions of stroke victims and data preparation example

Language: Jupyter Notebook - Size: 15.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

mansikath/Fasta-to-Genbank-Converter

A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.

Language: Python - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

loggy01/EBV-transcript-variation-pipeline

Calculates Cp- and Wp-initiated transcript variation (Epstein-Barr virus)

Language: R - Size: 950 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

HuntsmanCancerInstitute/SBApps

Tools for working with the Seven Bridges bioinformatics platform.

Language: Java - Size: 51.8 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

akshayparopkari/shell-genomics Fork of datacarpentry/shell-genomics

Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget

Language: Python - Size: 50.5 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

gabywald/PhyloGenetik

An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )

Language: Java - Size: 1.98 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

mdibl/data_downloads

A repository to create automations that download external datasets

Language: Shell - Size: 339 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

hchauvin/fluodilution 📦

Fluorescence dilution/proliferation assay toolkit in R 🔬📊

Language: R - Size: 3.41 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0