Topic: "pacbio-data"
tjiangHIT/cuteSV
Long read based human genomic structural variation detection with cuteSV
Language: Python - Size: 3.16 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 263 - Forks: 37
bcgsc/arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Language: C++ - Size: 106 MB - Last synced at: about 2 months ago - Pushed at: 7 months ago - Stars: 94 - Forks: 16
PacificBiosciences/HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Language: Rust - Size: 796 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 72 - Forks: 4
yjx1217/LRSDAY
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Language: Perl - Size: 155 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 29 - Forks: 8
deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
Language: C++ - Size: 156 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 22 - Forks: 9
tjiangHIT/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Language: Python - Size: 1.02 MB - Last synced at: 16 days ago - Pushed at: 10 months ago - Stars: 18 - Forks: 4
niaid/UMI-pacbio-pipeline
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
Language: Python - Size: 145 KB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 6 - Forks: 2
hitbc/rMETL Fork of tjiangHIT/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Language: Python - Size: 1.04 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 0
IBCHgenomic/panscape
reads to genome, pangenome graphs, summarize and analyze
Language: Rust - Size: 1.06 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0
xapple/pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
Language: Python - Size: 14.9 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
KatjaKo/PacBio_AMF
A workflow for processing CCS reads of AMF to ASVs using DADA2
Language: R - Size: 8.96 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1
conchoecia/hormiphora
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
Language: HTML - Size: 433 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
comery/HIFI-barcode-pacbio
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
Language: Perl - Size: 8.09 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1
IBCHgenomic/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
Language: HTML - Size: 75.3 MB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 1
codecreatede/pacbiohifi-motif-scanner
extracting specific motifs from pacbio and oxford nanopore long reads.
Language: Ruby - Size: 4.88 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pacbio-polyATGC-remove
polyATGC pacbio/oxford nanopore estimator
Language: Python - Size: 1.95 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
Language: Python - Size: 2.93 KB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
Language: Python - Size: 27.3 KB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
sablokgaurav/pacbio_hifiasm_polished
a streamline for the pacbiohifiasm and polishing and also making the contiguity maps both instance based and a snakemake code.
Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
sablokgaurav/plant_genome_sequencing_illumina_pacbio_oxford_nanopore
This repository contains the sequence analysis and how to process the plant pacbio genome analysis from the genome assembly to the organelle assembly to the genome annotations and the evolutionary and the confirmational predictions. It will include the complete streamline workflow for all the analysis.
Language: Python - Size: 16.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
fcunial/Revant
De novo repeat inference from long reads
Language: Java - Size: 1.22 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
AukeHaver/salmonella_methylation_pipeline
SMP: A Salmonella Methylation analysis Pipeline
Language: R - Size: 13.7 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
jacobwindsor/SQANTIExplorer
Inter-sample analysis of SQANTI classifications
Language: R - Size: 4.85 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
