Topic: "pacbio-sequencing"
bcgsc/RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
Language: Java - Size: 2.41 MB - Last synced at: 25 days ago - Pushed at: over 1 year ago - Stars: 103 - Forks: 8
PacificBiosciences/MethBat
A battery of methylation tools for PacBio HiFi reads
Size: 7.72 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 31 - Forks: 1
WGLab/NanoRepeat
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Language: Python - Size: 1.05 MB - Last synced at: 20 days ago - Pushed at: 6 months ago - Stars: 18 - Forks: 1
zhixingfeng/iGDA
Detect and phase minor SNVs from long-read sequencing data
Language: C++ - Size: 114 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 0
Mangul-Lab-USC/review-technology-dictates-algorithms
A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
Language: Jupyter Notebook - Size: 44.6 MB - Last synced at: 10 months ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 3
zhengzhenxian/Repun
An accurate small variant representation unification method for multiple sequencing platforms
Language: Python - Size: 180 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 3 - Forks: 1
IBCHgenomic/panscape
reads to genome, pangenome graphs, summarize and analyze
Language: Rust - Size: 1.06 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0
RevantOrg/Revant
De novo repeat inference from long reads
Language: Java - Size: 3.15 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
GDelevoye/SMSN
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
Language: Python - Size: 114 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
nicolo-tellini/LRSDAY-Patch
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
Language: Shell - Size: 1.33 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
caspargross/expander
Identify and characterize repeat expansions in long read data
Language: R - Size: 250 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
IBCHgenomic/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
Language: HTML - Size: 75.3 MB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 1
codecreatede/pacbiohifi-motif-scanner
extracting specific motifs from pacbio and oxford nanopore long reads.
Language: Ruby - Size: 4.88 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
codecreatede/fyne-pacbiohifi
a fyne application for pacbiohifi genome analysis
Language: Go - Size: 28.3 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pacbio-polyATGC-remove
polyATGC pacbio/oxford nanopore estimator
Language: Python - Size: 1.95 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
Language: Python - Size: 27.3 KB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
sablokgaurav/pacbiohifi_docker
a dockerized approach to pacbio hifi which includes a linter enabled for writing the docker files and a native cell configurator for the pacbio hifi reads which can be extended for any applications.
Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
ibenjame/SM-PATseq
Snakemake workflow for SM-PATseq
Language: R - Size: 39.1 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
