poke1024/pyalign

Fast and Versatile Alignments for Python

Language: C++ - Size: 563 KB - Last synced at: 16 days ago - Pushed at: about 2 years ago - Stars: 49 - Forks: 6

poke1024/simileco 📦

A header-only templated C++17-library for fast and versatile sequence alignment computations.

Language: C++ - Size: 9.77 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0

mutalibcs/Bio-informatics

Bio informatics course materials for NEUB students.

Language: C++ - Size: 597 KB - Last synced at: 6 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

giorgapost/smith-waterman-algorithm

A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.

Language: C++ - Size: 4.58 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

Seb943/Smith_Waterman_Py

Implementing the Smith-Waterman algorithm in Python

Language: Python - Size: 13.7 KB - Last synced at: 7 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

shivChitinous/seq-al

aligning DNA and protein sequences using dynamic programming

Language: Jupyter Notebook - Size: 2.46 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

Noorts/DLSA 📦

🧬 Distributing Local Sequence Alignment using Volunteer Computing

Language: Python - Size: 32.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

CharliesCodes/bioinformatics

A compilation of all the programs in my bioinformatics course

Language: Python - Size: 1.34 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Howeng98/Smith_Waterman_parallel

Implement parallel Smith Waterman algorithm on CUDA

Language: Cuda - Size: 46.5 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

tsoomo446/bioinformatic

Next.js project implementing bioinformatics algorithms, including Needleman-Wunsch and Smith-Waterman, for sequence alignment with a modern web interface. ICSI310 ,Introduction to Bioinformatics

Language: TypeScript - Size: 1.26 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

ESJiang/Evaluation-of-Word-Blends

COMP90049 Introduction to Machine Learning Assignment 1 2019 s2

Language: Java - Size: 3.05 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

jeremyButtler/alnSeq

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg. It can run as a standalone or as a library for python.

Language: C - Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Blinsk/AlignmentOfObjectArrays

NodeJs implementation of Smith-Waterman- and Needleman-Wunsch-Algorithm for Arrays of Objects

Language: JavaScript - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Junior-Weil/Longest-Common-Subsequence

Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm

Language: Python - Size: 44.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

sonechkina/SmithWaterman

R package for global alignment between two genomic sequences

Language: R - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

olledejong/Sequence-Alignment

A program that can either perform a global, or local sequence alignment

Language: C++ - Size: 34.2 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

anita-brzoza/university_projects

The repository contain directories of projects done during the bioinformatics degree program

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grace-raper/smith-waterman

The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment

Language: Java - Size: 24.4 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

AntonioFuziy/DNA_mutation_detector

A C++ project to detect mutations on DNA sequence, comparing two DNA samples. This project was built based on a Supercomputing subject and some classic algorithms are used in this project, such as Smith Waterman, Random Local Search and Exaustive Search

Language: Jupyter Notebook - Size: 2.92 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

didar00/Global-and-Local-Alignment-Algorithms

Implementations of Needleman-Wunsch (global alignment) and Smith-Waterman (local alignment) algorithms using Python.

Language: Python - Size: 11.7 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

fadyehabamer/BioInformatics-SandBox

Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department

Size: 3.91 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Kostisef/smith-waterman-parallel

A parallel implementation of Smith-Waterman algorithm for determining similar regions between two strings of nucleic acid sequences or protein sequences.

Language: C++ - Size: 56.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Brandonag1997/Local-Alignment

A Go implementation of the Smith–Waterman algorithm

Language: Go - Size: 54.7 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

quyixiang/Map_miRNA_targets

Language: Python - Size: 363 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0