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Topic: "gotoh-algorithm"

poke1024/pyalign

Fast and Versatile Alignments for Python

Language: C++ - Size: 563 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 50 - Forks: 7

lignum-vitae/goombay

Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

Language: Python - Size: 467 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 3

RJPenic/OSALG

Optimal Sequence Aligner allowing for Long Gaps

Language: C++ - Size: 80.1 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

Related Topics
alignment 2 gotoh 2 bioinformatics 2 sequence-alignment 2 smith-waterman-algorithm 1 needleman-wunsch-algorithm 1 digital-humanities 1 simd 1 waterman-smith-beyer 1 smith-waterman 1 similarity 1 shortest-common-supersequence 1 ratcliff-obershelp 1 python3 1 python 1 needleman-wunsch 1 longest-common-substring 1 longest-common-subsequence 1 levenshtein-distance 1 jaro-winkler 1 jaro 1 hirschberg 1 hamming-distance 1 distance 1