needleman-wunsch-algorithm | Topic

Topic: "needleman-wunsch-algorithm"

poke1024/pyalign

Fast and Versatile Alignments for Python

Language: C++ - Size: 563 KB - Last synced at: 11 days ago - Pushed at: almost 2 years ago - Stars: 49 - Forks: 6

mmtechslv/nwunch

Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.

Language: Python - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 13 - Forks: 4

blievrouw/needleman-wunsch

Demo of Needleman-Wunsch algorithm

Language: HTML - Size: 407 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 7 - Forks: 0

zumrudu-anka/cpp-openmp-needleman-wunsch

:microscope: :checkered_flag: Comparison of DNA Sequences

Language: C++ - Size: 3.76 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 2

DulanDias/DNA-Sequence-Alignment

DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.

Language: Java - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 1

mgfzemor/Pairwise-sequence-Aligment-Tool

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Language: HTML - Size: 50.8 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 0

JacobHanimann/IsoAligner

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

Language: Python - Size: 215 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 2

Enescigdem/SequenceAlignment

Global and Local Sequence Alignment

Language: Python - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

poke1024/simileco 📦

A header-only templated C++17-library for fast and versatile sequence alignment computations.

Language: C++ - Size: 9.77 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0

mutalibcs/Bio-informatics

Bio informatics course materials for NEUB students.

Language: C++ - Size: 597 KB - Last synced at: 4 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0

priyanshu-lanjewar/DNA-Sequence-Alignment-App

Language: Kotlin - Size: 44.9 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

shivChitinous/seq-al

aligning DNA and protein sequences using dynamic programming

Language: Jupyter Notebook - Size: 2.46 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

Niloth-p/Phylogenetic-Tree-construction-using-Agglomerative-and-Divisive-Hierarchical-clustering

The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods

Language: Python - Size: 124 KB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

PSNAppz/Needleman-Wunsch

Simple Needleman Wunsch Algorithm in C

Language: C - Size: 9.77 KB - Last synced at: about 1 month ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 1

OmarMDiab/Bioinformatics-Needle_man-And-Affine_Gap

Implementation of Needleman and Affine Gap Bioinformatics Algorithms 🧬

Language: Jupyter Notebook - Size: 449 KB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

CharliesCodes/bioinformatics

A compilation of all the programs in my bioinformatics course

Language: Python - Size: 1.34 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

MohdFarag/Bioinformatics-Sequence-Alignment

GUI for software that can do global pairwise, local pairwise, multiple sequence Alignment.

Language: Python - Size: 151 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

egotist0/Gene-Factory

A visual biology tool widget that can be used for string proximity matching, nucleic acid sequence generation at specified ratios, and match evaluation

Language: Python - Size: 3.37 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

saminheydarian/NLP_Course_2021

NLP Course | Home Works | Fall 2021 | Dr. Behrooz Minaei

Language: Jupyter Notebook - Size: 29.8 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

Howeng98/Smith_Waterman_parallel

Implement parallel Smith Waterman algorithm on CUDA

Language: Cuda - Size: 46.5 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

zartilas/Bioinformatics-Projects

Language: MATLAB - Size: 1.73 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

m-walid/Bioinformatics-Alignment-Algorithms

Language: JavaScript - Size: 352 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

rameziophobia/bioinformatics-algorithms

implementation and visualizations for sequence alignment algorithms

Language: JavaScript - Size: 790 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

vanleiko/alignment-web-app

Web App para alinhamento de sequências de DNA

Size: 1.13 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

projektjoe/Needleman-Wunsch-Bioinformatics

algorithm used in bioinformatics to align protein or nucleotide sequences. the algorithm finds the best alignments possible between the 2 strings. Techniques such as Recursive depth first traversing, dynamic programming were used.

Language: Python - Size: 10.7 KB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

alimz758/Sequence-Alignment---Bio-informatics

Global and local DNA sequence alignment

Language: Python - Size: 112 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

alperencubuk/Sequence-Alignment-with-NW-Algorithm

Implementation of Needleman–Wunsch algorithm. Compare sequences (in fasta files) and list max scored sequences. Multithreaded with OpenMP.

Language: C - Size: 1.77 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

giamuhammad/needleman-wunsch_global_alignment

Global Alignment for DNA/RNA/Protein Sequence. Needleman-Wunsch Algorithm. An Implementation in Web with Python and Flask Back-end

Language: Python - Size: 375 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 1

timGalk/NWAlgo

Desktop app for bioinformatics

Language: Kotlin - Size: 113 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

tsoomo446/bioinformatic

Next.js project implementing bioinformatics algorithms, including Needleman-Wunsch and Smith-Waterman, for sequence alignment with a modern web interface. ICSI310 ,Introduction to Bioinformatics

Language: TypeScript - Size: 1.26 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

vncsmnl/needleman-wunsch

🧬 This project implements the Needleman-Wunsch algorithm for global sequence alignment.

Language: Python - Size: 4.88 KB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

leila-kasmi-lk150/SequenceAlignment

Implementation of Sequence Alignment using Needleman-Wunsch and Smith-Waterman algorithms with fixed scoring values.

Language: Java - Size: 144 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

OOAAHH/TrySomeDiffcult

一些算法实践Algorithmic practice

Language: Python - Size: 624 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

joyou159/Pairwise-Sequence-Alignment

This repository provides implementations for basic sequence alignment techniques, focusing on two popular methods: Dot Plot and Needleman-Wunsch algorithm.

Language: Python - Size: 120 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

kaarthigeyan2105/DNA-sequence-alignment

Aligning two DNA sequences to identify similarities and differences between them.Using the Needleman-Wunsch algorithm, computed the optimal global alignment score and the corresponding alignment for these sequences.

Size: 752 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

hernanmd/needleman-wunsch

Implementation of the Needleman-Wunsch algorithm in Pharo

Language: Smalltalk - Size: 22.5 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Blinsk/AlignmentOfObjectArrays

NodeJs implementation of Smith-Waterman- and Needleman-Wunsch-Algorithm for Arrays of Objects

Language: JavaScript - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Junior-Weil/Longest-Common-Subsequence

Longest Common Subsequence algorithm. Global Alignment is the Needleman Wunsche algorithm and the local alignment is Smith Waterman algorithm

Language: Python - Size: 44.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mtamerb/needleman-algo

Needleman-Wunsch algoritması, iki dizinin hizalanması için kullanılan bir dinamik programlama algoritmasıdır. Bu algoritma, iki dizinin tüm karakterlerinin hizalanmasını sağlar ve her bir karakterin eşleşme skorunu hesaplayarak, en iyi hizalamayı bulur. Topics

Language: Java - Size: 497 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mtamerb/needleman-wunsch-app-gui

Language: Java - Size: 3.79 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

olledejong/Sequence-Alignment

A program that can either perform a global, or local sequence alignment

Language: C++ - Size: 34.2 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

haekalyulianto/Needleman_Wunsch

Needleman-Wunsch Algorithm Implementation for Bioinformatics Class

Language: Jupyter Notebook - Size: 39.1 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

didar00/Global-and-Local-Alignment-Algorithms

Implementations of Needleman-Wunsch (global alignment) and Smith-Waterman (local alignment) algorithms using Python.

Language: Python - Size: 11.7 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

fadyehabamer/BioInformatics-SandBox

Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department

Size: 3.91 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

joaomota59/bioInformatica

Programas usados em BioInformática

Language: Jupyter Notebook - Size: 1.77 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

hr21don/needleman_wunsch

A dynamic programming algorithm for finding the optimal alignment of two strings.

Language: Python - Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Brandonag1997/Global-Alignment

A python implementation of the Needleman–Wunsch algorithm

Language: Python - Size: 60.5 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

AhmadAymanBahaa/Bioinformatics

Sequence Alignment Algorithms: Dot Matrix Representation, Needleman-Wunsch Algorithm, and Smith-Waterman Algorithm.

Language: Jupyter Notebook - Size: 89.8 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

WileyBui/Computational-Techniques-for-Genomics

Techniques to analyze biological data generated by genome sequencing, proteomics, cell-wide measurements of gene expression changes. Algorithms for single/multiple sequence alignments/assembly. Search algorithms for sequence databases, phylogenetic tree construction algorithms. Algorithms for gene/promoter and protein structure prediction.

Language: Python - Size: 2.55 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Topic: "needleman-wunsch-algorithm"

poke1024/simileco 📦

crazypegasusvv/Needleman-Wunsh_algorithm Fork of paldynaagata/Needleman-Wunsh_algorithm