Topic: "phylogenetic-tree"
YuLab-SMU/tidytree
:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation
Language: R - Size: 281 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 49 - Forks: 15
Changwanseo/FunVIP
Fungal Validation and Identification Pipeline
Language: Python - Size: 119 MB - Last synced at: 18 days ago - Pushed at: 3 months ago - Stars: 10 - Forks: 0
bioinfweb/TreeGraph2
A feature rich and easy to use phylogenetic tree editor
Language: Java - Size: 23.8 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 1
dfornika/tree-with-metadata
Draw a phylogenetic tree, along with a table of metadata
Language: Python - Size: 29.3 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1
Niloth-p/Phylogenetic-Tree-construction-using-Agglomerative-and-Divisive-Hierarchical-clustering
The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods
Language: Python - Size: 124 KB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1
zengxiaofei/busco-tree
A pipeline to construct phylogenetic tree using BUSCOs
Language: Python - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 2
eric9n/clade
A tool for phlyo tree, a phylogenetic tree construction software.
Language: Rust - Size: 48.8 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
sophiagosselin/tANI_tool
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
Language: Perl - Size: 142 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2
fethalen/orthoquoll
A stand-alone tool for evaluating simple statistics of orthologs
Language: Python - Size: 340 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
anicksaha/neighbor_joining
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
Language: Python - Size: 1.2 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
kmampent/CacheTD
Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
Language: Objective-C - Size: 16.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 1
zitunstu24/phyloalignx
A pipeline for MSA and phylogenetic tree generation from a fasta file of neucleotide sequences
Language: Python - Size: 34.2 KB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0
chenyangkang/bird_phylogeny
Bird (avian) phylogenetic tree with bird pictures
Size: 24.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
darwinsorchid/SARSCoV2-Phylogenetic-Tree
[Python] Construction of SARS-CoV-2 Phylogenetic Tree.
Language: Python - Size: 2.93 KB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
charlesrocabert/puutools
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
Language: C++ - Size: 7.85 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
pebgroup/Global-plant-diversity
Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)
Language: R - Size: 185 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
laelbarlow/sort_seqs_by_clade
Script for sorting FASTA sequences by clade in a given tree topology.
Language: Python - Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
tomekkorbak/computational-genomics-experiments
A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw
Language: Jupyter Notebook - Size: 1.16 MB - Last synced at: 21 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1
BenbowLab/Benin-NGS
Example files for Benin NGS capacity building project
Language: HTML - Size: 1.36 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
