hanielcedraz/BAQCOM

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

Language: R - Size: 102 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 1

datasnakes/htseq-count-cluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

Language: Python - Size: 71.3 KB - Last synced at: 19 days ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 0

furkanmtorun/rna-seq-workflow 📦

🛠 under active development | RNA-Seq Workflow in Jupyter Notebook

Language: Jupyter Notebook - Size: 30.3 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

wucc009/Platelet_transcriptome_fastq_data_processing

血小板转录组fastq数据处理

Language: Shell - Size: 22.5 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

gih0004/RNA_seq_pipeline

RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

Language: Shell - Size: 36.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

Pinky-cloud224/snakemake_workflow_rna_seq_data_analysis

Language: Jupyter Notebook - Size: 975 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Manninm/MiKTMCSnakemakePipeline

Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows

Language: R - Size: 8.54 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

bixBeta/xcode.beta

SLURM job temps @UALBANY

Language: Shell - Size: 14.6 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

mattgalbraith/htseq2-docker-singularity

Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity

Language: Dockerfile - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

BreisOne/RNA-seq_scripts

Bash scripting workflow to perform RNA-seq analysis in a HPC Cluster. Alignment with STAR, count matrix generation with HTSeq and the merge of the different count matrix.

Language: Shell - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0