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GitHub / sorgerlab / indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sorgerlab%2Findra
Stars: 161
Forks: 60
Open Issues: 41
License: bsd-2-clause
Language: Python
Repo Size: 362 MB
Dependencies:
28
Created: almost 10 years ago
Updated: 3 days ago
Last pushed: 2 days ago
Last synced: 2 days ago
Commit Stats
Commits: 12599
Authors: 23
Mean commits per author: 547.78
Development Distribution Score: 0.543
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/sorgerlab/indra
Topics: bioinformatics, biology, computational-biology, indra, modeling, nlp, pysb, sbml, systems-biology
Files
Dependencies
- docutils <0.18
- future *
- ipython *
- jinja2 *
- matplotlib *
- mock *
- networkx >=2.1
- obonet *
- pandas *
- pronto *
- protmapper *
- pybel *
- pybiopax *
- pysb *
- pyyaml *
- rdflib ==4.2.1
- requests *
- scikit-learn *
- sphinx *
- sphinx-argparse *
- sphinx_autodoc_typehints *
- sphinx_rtd_theme *
- unidecode *
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- actions/setup-python v2 composite
- ubuntu latest build