protmapper | pypi | Package Usage

saezlab/pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

0.0.26 poetry.lock

Size: 141 MB - Last synced: 6 days ago - Pushed: 16 days ago

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

* doc/requirements.txt

Size: 362 MB - Last synced: 7 days ago - Pushed: 8 days ago

PritiShaw/Reactome-Failed-Queries

==0.0.17 src/python/Pipfile.lock
==0.0.17 src/python/requirements.txt

Size: 1.24 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

johnbachman/indra Fork of sorgerlab/indra

OpenBEL / PySB bridge

* doc/requirements.txt

Size: 324 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

bgyori/indra Fork of sorgerlab/indra

Integrated Network and Dynamical Reasoning Assembler

* doc/requirements.txt

Size: 373 MB - Last synced: 9 days ago - Pushed: 10 days ago

ur-whitelab/nlcc-data

Benchmark dataset and evaluation for large language models that generate code

==0.0.21 requirements.txt

Size: 71.1 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

vishalbelsare/indra-1 Fork of sorgerlab/indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

* doc/requirements.txt

Size: 315 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

MelihDarcanxyz/pypath Fork of saezlab/pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

0.0.27 poetry.lock

Size: 106 MB - Last synced: 5 months ago - Pushed: 5 months ago

007gzs/test

* requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

baitutanglj/cadd

==0.0.21 pyCode/requirements.txt

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: about 1 year ago

idekerlab/llm_evaluation_for_gene_set_interpretation

Code space for 'Evaluation of large language models for discovery of gene set function'

=0.0.27=pypi_0 requirements.txt

Size: 207 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

biocypher/pypath Fork of saezlab/pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

0.0.27 poetry.lock

Size: 83.4 MB - Last synced: 9 months ago - Pushed: about 1 year ago

gyorilab/protmapper_paper

Code to generate results and figures relevant to the ProtMapper manuscript.

* requirements.txt

Size: 7.04 MB - Last synced: 15 days ago - Pushed: 15 days ago

lyfer233/indra Fork of sorgerlab/indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

* doc/requirements.txt

Size: 296 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

SystemInternal/indra Fork of sorgerlab/indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

* doc/requirements.txt

Size: 315 MB - Last synced: 8 months ago - Pushed: 8 months ago

dnjst/pypath Fork of saezlab/pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

0.0.26 poetry.lock

Size: 79.4 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

WangXII/indra-1 Fork of sorgerlab/indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.