Topic: "biochemical-networks"
biosimulations/biosimulations
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Language: TypeScript - Size: 198 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 41 - Forks: 14
biomass-dev/biomass
A Python Framework for Modeling and Analysis of Signaling Systems
Language: Python - Size: 26 MB - Last synced at: 9 days ago - Pushed at: 21 days ago - Stars: 29 - Forks: 13
pasmopy/pasmopy
Patient-Specific Modeling in Python
Language: Python - Size: 5.09 MB - Last synced at: 9 days ago - Pushed at: 21 days ago - Stars: 17 - Forks: 7
BhallaLab/FindSim
FindSim - A Framework for Integrating Neuronal Data and Signaling Models
Language: GAP - Size: 1.13 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 8
biosimulators/Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Language: Python - Size: 56 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 7 - Forks: 2
charlesrocabert/MetEvolSim
MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.
Language: Python - Size: 43 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0
draeger-lab/SBMLsqueezer
Context-sensitive creation of kinetic equations in biochemical networks
Language: HTML - Size: 608 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 0
biosimulators/Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 4.4 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 2 - Forks: 2
biosimulators/Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 10.6 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 3
biosimulators/Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.26 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
bradduthie/RandomMatrixStability
R package associated with paper "Component response rate variation underlies the stability of highly complex finite systems" (Duthie, AB. 2020. Sci. Rep. 10:8296, https://www.nature.com/articles/s41598-020-64401-w). This repository contains all manuscript text and supplemental information, and all code for recreating analyses.
Language: HTML - Size: 253 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.4 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
biosimulators/Biosimulators_BioNetGen Fork of ASinanSaglam/BNG_BioSimDocker
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.21 MB - Last synced at: 1 day ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2
biomass-dev/BioMASS.jl
Julia interface to BioMASS
Language: Julia - Size: 1.66 MB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 2
charlesrocabert/Simple-Evolvability-Model
Individual-based model simulating the evolution of random genetic regulation networks in variable environments.
Language: C++ - Size: 3.36 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
AGCT-DSL/AGCT 📦
Another Genetic Circuit Transcriber
Language: Kotlin - Size: 349 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
manvelgasparyan/settling_time
This repository is used to determine the settling time of a given biochemical reaction network using the approach described in the manuscript "An Automated Model Reduction Method for Biochemical Reaction Networks" published in "Symmetry".
Language: MATLAB - Size: 52.7 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
JRC-COMBINE/TROSS
Tropical Sensitivity Scores
Language: R - Size: 80.1 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 3
