An open API service providing repository metadata for many open source software ecosystems.

Topic: "immunology"

milaboratory/mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Language: Kotlin - Size: 47.1 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 365 - Forks: 80

slowkow/awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

Size: 575 KB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 228 - Forks: 30

whitews/FlowKit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Language: Python - Size: 137 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 176 - Forks: 51

antigenomics/vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

Language: Groovy - Size: 17.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 137 - Forks: 26

mikessh/vdjtools

Post-analysis of immune repertoire sequencing data

Language: Groovy - Size: 31.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 126 - Forks: 40

greenelab/covid19-review

A collaborative review of the emerging COVID-19 literature. Join the chat here:

Language: TeX - Size: 8.75 GB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 117 - Forks: 82

sidhomj/DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

Language: Jupyter Notebook - Size: 102 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 112 - Forks: 40

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 67 - Forks: 32

JamieHeather/stitchr

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

Language: Python - Size: 31 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 54 - Forks: 10

dmnfarrell/epitopepredict

Python package and command line tool for epitope prediction

Language: Jupyter Notebook - Size: 24.9 MB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 51 - Forks: 22

qmarcou/IGoR

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:

Language: C - Size: 9.96 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 49 - Forks: 25

mikessh/migmap

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Language: Groovy - Size: 14.6 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 49 - Forks: 20

whitews/FlowIO

A Python library for reading and writing Flow Cytometry Standard (FCS) files

Language: Python - Size: 11.5 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 46 - Forks: 23

andrewrech/antigen.garnish

Language: R - Size: 26 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 45 - Forks: 13

CRI-iAtlas/shiny-iatlas

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

Language: R - Size: 1.45 GB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 45 - Forks: 12

mikessh/migec

A RepSeq processing swiss-knife

Language: Groovy - Size: 98.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 41 - Forks: 21

Japrin/sscClust

simpler single cell RNAseq data clustering

Language: R - Size: 6.96 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 40 - Forks: 16

burtonrj/CytoPy 📦

A data-centric flow/mass cytometry automated analysis framework

Language: Python - Size: 140 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 38 - Forks: 9

mims-harvard/COMPASS

Generalizable AI predicts immunotherapy outcomes across cancers and treatments

Language: Jupyter Notebook - Size: 677 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 36 - Forks: 6

imminfo/tcr

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

Language: R - Size: 33.4 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 36 - Forks: 24

LCSB-BioCore/GigaSOM.jl

Huge-scale, high-performance flow cytometry clustering in Julia

Language: Julia - Size: 3.77 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 35 - Forks: 9

PaccMann/TITAN

Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)

Language: Jupyter Notebook - Size: 47.6 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 29 - Forks: 6

BaderLab/HumanLiver

R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

Language: R - Size: 329 MB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 27 - Forks: 11

antigenomics/vdjviz

⚙️ A lightweight immune repertoire browser

Language: JavaScript - Size: 39.2 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 27 - Forks: 10

uio-bmi/compairr

Comparison of Adaptive Immune Receptor Repertoires

Language: C++ - Size: 320 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 26 - Forks: 5

innate2adaptive/decombinator

Decombinator v5: fast, error-correcting analysis of TCR repertoires

Language: Python - Size: 8.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 25 - Forks: 8

RGLab/ImmuneSpaceR

An R Interface to the ImmuneSpace database portal

Language: R - Size: 81.3 MB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 24 - Forks: 11

PacificBiosciences/hifihla

An HLA star-calling tool for PacBio HiFi data types

Size: 61.5 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 22 - Forks: 2

arosenfeld/immunedb

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

Language: Python - Size: 15 MB - Last synced at: 23 days ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 11

burkesquires/immunology-informatics 📦

Immunology Informatics - Big Data Analysis in Immunology - Tutorials

Language: R - Size: 278 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 21 - Forks: 6

rnabioco/djvdj

An R package to analyze single-cell V(D)J data

Language: R - Size: 110 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 20 - Forks: 4

slowkow/hlabud

🐶 hlabud: HLA genotype analysis in R

Language: R - Size: 26.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 16 - Forks: 0

ShawHahnLab/vquest

Automate IMGT V-QUEST usage on imgt.org

Language: Python - Size: 120 KB - Last synced at: 27 days ago - Pushed at: almost 3 years ago - Stars: 14 - Forks: 3

lkuchenb/MultiHLA

WES HLA Typing based on multiple alternative tools

Language: Python - Size: 110 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 12 - Forks: 2

AmayaGS/BioX-CPath

A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025

Language: Python - Size: 54.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 11 - Forks: 0

yutanagano/sceptr

Highly informative TCR representation model

Language: Python - Size: 14.7 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 11 - Forks: 2

ctboughter/AIMS

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation

Language: Jupyter Notebook - Size: 497 MB - Last synced at: about 3 hours ago - Pushed at: about 9 hours ago - Stars: 9 - Forks: 5

MarioniLab/ImmuneAging2017

Code for Celia and Nils' immune aging project.

Language: R - Size: 33.1 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 9 - Forks: 9

antigenomics/repseq-annotation-tutorial

📝 [Tutorial] RepSeq data mining basics in R

Language: TeX - Size: 10.8 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 6

yutanagano/tidytcells

Standardise TR/MH data

Language: Python - Size: 40.3 MB - Last synced at: 18 days ago - Pushed at: 5 months ago - Stars: 8 - Forks: 3

immunomind/2019-airr-genova-tutorial-pytorch

Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV

Language: Jupyter Notebook - Size: 2.16 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 8 - Forks: 0

meyer-lab-cshl/BATMAN

Bayesian inference of Activation of TCR by Mutant Antigens

Language: Jupyter Notebook - Size: 2.02 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 0

smith6jt-cop/KINTSUGI

Jupyter notebook based multiplex image processing pipeline.

Language: Jupyter Notebook - Size: 533 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 0

AmayaGS/ImmunoHistoBench

A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

Language: Python - Size: 2.36 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 7 - Forks: 0

Mangul-Lab-USC/TAIR

The Atlas of Immunoglobulin Repertoires (TheAIR)

Language: Jupyter Notebook - Size: 10 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 1

SVAI/bearlyunderstanding

ML based prediction of immunogenic neoantigens for immunotherapy

Language: Pep8 - Size: 24.1 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 7 - Forks: 1

NIH-NEI/IAN

IAN: An Intelligent System for Omics Data Analysis and Discovery

Language: R - Size: 10.3 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 6 - Forks: 3

snaketron/IgGeneUsage

Comparison of gene usage in immune repertoires under different biological conditions

Language: R - Size: 281 MB - Last synced at: about 6 hours ago - Pushed at: 3 months ago - Stars: 6 - Forks: 1

matsengrp/linearham

A Bayesian Phylo-HMM for B cell receptor sequence analysis

Language: C++ - Size: 12.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 4

Teichlab/thymus_spatial_atlas

general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

Language: Jupyter Notebook - Size: 395 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 5 - Forks: 0

b-cell-immunology/sciReptor 📦

Single-Cell Immunoglobulin Repertoire Toolkit

Language: Perl - Size: 342 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 1

BostonGene/pyigmap

[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences

Language: Jupyter Notebook - Size: 13.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0

MuteJester/LZGraphs

LZ76 Graphs and Applications in Immunology

Language: Python - Size: 2.01 MB - Last synced at: 5 days ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0

bitdessin/PyDAIR

PyDAIR: Python library for diversity analysis of immune repertoire

Language: HTML - Size: 38.7 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0

msfuji/immunoduct

Pipeline for tumor immunology

Language: R - Size: 6.39 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 4 - Forks: 3

Senso/Immunidle

A console-based idle RPG take on the human immune system

Language: Python - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 3

epigen/macrophage-regulation

Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation

Language: Jupyter Notebook - Size: 29.1 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 3 - Forks: 0

meyer-lab-cshl/BATMAN-paper

Bayesian inference of Activation of TCR by Mutant Antigens

Language: Python - Size: 390 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

snaketron/ClustIRR

Clustering of immune receptor repertoires

Language: R - Size: 42.8 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0

mnielLab/NetTCR-2.2

Sequence-based prediction of peptide-TCR interactions using paired chain data

Language: Python - Size: 562 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 2

cvisb/cvisb_data

Data portal and API for Center for Viral Systems Biology (CViSB) data

Language: TypeScript - Size: 53.1 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

johnnytam100/NbX

https://www.mdpi.com/1424-8247/14/10/968

Language: Python - Size: 813 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

mariomarroquim/eplogic

Scripts for Anti-HLA antibody target prediction via machine learning

Language: HTML - Size: 2.16 MB - Last synced at: 4 months ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1

mattfemia/iedb-python

Python SDK for Immune Epitope Database (IEDB) Analysis Tools API

Language: Python - Size: 7.81 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1

immunomind/slides

Slides for presentations by ImmunoMind team

Size: 6.53 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 0

imminfo/mhc

Language: Jupyter Notebook - Size: 191 MB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 3 - Forks: 1

immunomind/immunarch

An R Package for Fast and Effortless Analysis of Large-Scale Immune Repertoire Data. https://immunarch.com

Last synced at: over 2 years ago - Stars: 3 - Forks: 0

PaulRegnier/PICAFlow

PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

Language: R - Size: 234 KB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 2 - Forks: 2

ctglab/ENEO

Language: Python - Size: 505 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

aweich/VIS

Snakemake workflow for the detection of vector insertion sites (VIS) in long-read sequencing data

Language: Python - Size: 11.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1

wzbillings/dissertation-proposal 📦

Code, text, figures, etc. for reproducing my dissertation proposal, "Impact of Host and Vaccine Characteristics on Immune Responses following Influenza Vaccination".

Language: TeX - Size: 138 MB - Last synced at: 5 days ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

francescopatane96/eNERVE

eNERVE is a dynamic, high-throughput and standalone in silico reverse vaccinology pipeline for eukaryotic protein candidate vaccines (PVCs) discovery from entire proteomes (FASTA file).

Language: Jupyter Notebook - Size: 128 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

nec-research/tc-hard

Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

Language: Jupyter Notebook - Size: 1.68 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

meyer-lab/systemsSerology

Dissecting systems serology with a tensor factorization

Language: Python - Size: 8.39 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 2

phicks22/CAIN

An artificial immune network to simulate B-cell clonal selection and perform an agent-based game immune response.

Language: Python - Size: 62.5 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

akram-mohammed/akram-mohammed.github.io

My personal website :sparkles:

Language: HTML - Size: 8.16 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

germannp/lana

Lymphocyte analysis toolbox.

Language: Python - Size: 438 KB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

meyer-lab/gc-cytokines 📦

A binding-reaction model for the common gamma chain receptor cytokines.

Language: Python - Size: 8.07 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

PedroMilanezAlmeida/ezDAFi

Easy-to-use Directed Automated Filtering and Identification of cell populations in single cell data

Language: HTML - Size: 36.7 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

mariomarroquim/hla-antibody-analyzer

Electron app for performing HLA antibody analysis of reactivity panels

Language: HTML - Size: 39.1 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

DanielleMStevens/mamp-ml

mamp-ml: Prediction of immunogenic outcomes of LRR-PRRs and protein ligands in plants using pLM ESM-2

Language: Python - Size: 33 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 0

iAvicenna/PyRacmacs

A complete python interface to Racmacs via rpy2

Language: Python - Size: 2.87 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 0

BimberLab/nimble

nimble — execute lightweight, flexible alignments on custom reference libraries

Language: Python - Size: 215 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

neelsoumya/neelsoumya

About me (Soumya Banerjee)

Size: 115 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

mims-harvard/COMPASS-web

Web Companion for Generalizable AI predicts immunotherapy outcomes across cancers and treatments

Language: Jupyter Notebook - Size: 53 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

ShawHahnLab/igseq

IgSeq utilities

Language: Python - Size: 988 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

danilotat/RNA-neoflow

Snakemake workflow to profile MHC-I neoepitopes with bulk tumor RNAseq data

Language: Python - Size: 212 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

vembha/SIV_natural_control

Code repository for the publication. Contains Monolix and Julia files used for parameter estimation and data analysis, respectively.

Language: Julia - Size: 3.78 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

meyer-lab/FcRn-trafficking 📦

Trafficking model of FcRn to explain the effects of failed release at the cell surface.

Language: R - Size: 5.33 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

arcadio/nk-models

CD56bright natural killer cells preferentially kill proliferating CD4+ T cells

Language: R - Size: 18.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

ednieuw/ELISA-logit-regression

Logit regression in Microsoft Excel designed for ELISA and RIA tests.

Size: 6.04 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

EDS-Bioinformatics-Laboratory/reseda

Barbera van Schaik, Antoine van Kampen: REpertoire SEquence Data Analysis

Language: Jupyter Notebook - Size: 99.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

tuplexyz/SARS-CoV-2_N-Cytokine_Docking

Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.

Language: Shell - Size: 390 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

bioboot/cmi-pb_teaching

Educational Resources for the CMI-PB Project

Language: HTML - Size: 19.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2

vadimnazarov/tcr-specificity

T-cell receptor specificity prediction using Deep Learning

Language: Jupyter Notebook - Size: 5.87 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

jasminesmn/ABPEPserver

ABPEPserver is an online database and analytical platform that offers the visualization of a large-scale tumour proteomics analysis of Substitutant expression across multiple tumour types.

Language: R - Size: 1.34 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Menno-Meijer/T-cell-subsets-neural-network

This neural-network can predict the effector/memory T cell (T lymphocyte) subset of single cells based on flow cytometry data with 99,22% accuracy.

Language: Jupyter Notebook - Size: 2.19 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

Nekose/ICAP_Crawler

A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.

Language: Python - Size: 21.5 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

nickmmark/immune-phenotyping

Immune cell phenotyping of lung cancer and lung tissue using PCA, tSNE, and other techniques

Language: R - Size: 2.12 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

KimJR/MHC-I_binding_prediction

Language: Python - Size: 72.3 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

Related Topics
bioinformatics 58 immunoinformatics 33 computational-biology 15 machine-learning 15 single-cell 11 t-cell-receptor 11 python 10 tcr 10 sequencing 9 deep-learning 9 rep-seq 9 clustering 8 t-cell 8 flow-cytometry 8 tcr-repertoire 8 cancer 7 systems-biology 7 cytometry 7 scrna-seq 7 data-science 6 hla 6 rna-seq 6 transcriptomics 6 antibody 6 genomics 5 immunotherapy 5 hla-typing 5 immune-repertoire 5 academic-project 5 bcr-repertoire 4 data-analysis 4 immunoglobulin 4 bayesian-inference 4 immunological-bioinformatics 4 b-cell-receptor 4 cancer-research 3 bioinformatics-tool 3 imgt 3 hla-database 3 protein-protein-interaction 3 mass-cytometry 3 inference 3 hla-matching 3 virology 3 biology 3 fcs 3 python3 3 fcs-files 3 pipeline 3 flow-cytometry-analysis 3 integration 3 workflow 3 epitope-prediction-methods 3 database 3 flowcytometry 3 tcr-epitope 3 vaccine 3 rnaseq 3 deconvolution 3 research 3 dna 3 peptides 3 hiv 3 mhc 3 bioinformatics-pipeline 3 r 3 genetics 3 peptide-bioinformatics 2 t-cell-response 2 image-processing 2 single-cell-rna-seq 2 cytometry-analysis-pipeline 2 cytometry-data 2 epitope-immunogenicity-prediction 2 vdj-recombination 2 normalization 2 biotechnology 2 ig 2 vaccination 2 ngs 2 snakemake 2 vaccinology 2 artificial-immune-system 2 epitopes 2 repertoire-analysis 2 immune 2 bioinformatics-scripts 2 clustering-methods 2 single-antigen-beads 2 tutorial 2 bcr 2 clustering-algorithm 2 genome 2 dimensionality-reduction 2 t-cells 2 vdj 2 immunohistochemistry 2 molecular-biology 2 virus 2 elisa 2