Topic: "rep-seq"
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language: Kotlin - Size: 47.1 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 351 - Forks: 80
mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
Language: Groovy - Size: 31.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 126 - Forks: 40
mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Language: Groovy - Size: 14.6 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 49 - Forks: 20
mikessh/migec
A RepSeq processing swiss-knife
Language: Groovy - Size: 98.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 41 - Forks: 21
immunomind/covid19
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
Size: 470 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 41 - Forks: 4
antigenomics/vdjmatch
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
Language: Groovy - Size: 5.38 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 36 - Forks: 7
antigenomics/vdjviz
⚙️ A lightweight immune repertoire browser
Language: JavaScript - Size: 39.2 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 27 - Forks: 10
uio-bmi/compairr
Comparison of Adaptive Immune Receptor Repertoires
Language: C++ - Size: 320 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 26 - Forks: 5
krdav/SPURF
Substitution Profiles Using Related Families
Language: Python - Size: 2.53 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 8 - Forks: 1
immunomind/immunarch
An R Package for Fast and Effortless Analysis of Large-Scale Immune Repertoire Data. https://immunarch.com
Last synced at: over 2 years ago - Stars: 3 - Forks: 0
snaketron/ClustIRR
Clustering of immune receptor repertoires
Language: R - Size: 42.8 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
yana-safonova/cattle_rep_seq
Browser of clonal trees showing evolutionary development of antibodies with ultra-long CDR3s in 50 cattle individuals
Size: 27.2 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
mikessh/homebrew-repseq
Immune repertoire sequencing data analysis packages for Linux/MacOS.
Language: Ruby - Size: 15.8 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2