An open API service providing repository metadata for many open source software ecosystems.

Topic: "deconvolution"

flatironinstitute/CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Language: Python - Size: 572 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 668 - Forks: 383

moabitcoin/holy-edge

Holistically-Nested Edge Detection

Language: Python - Size: 25.6 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 325 - Forks: 143

digitalcytometry/ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

Language: R - Size: 663 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 151 - Forks: 38

HelmchenLabSoftware/Cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

Language: Jupyter Notebook - Size: 463 MB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 144 - Forks: 43

preritj/segmentation

Tensorflow implementation : U-net and FCN with global convolution

Language: Python - Size: 646 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 100 - Forks: 33

WeisongZhao/Sparse-SIM

Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3

Language: MATLAB - Size: 15.1 MB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 87 - Forks: 14

harsh1795/CNN-DICOM-Segmentation

DICOM Image Segmentation with CNNs in Tensorflow

Language: Jupyter Notebook - Size: 28.4 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 87 - Forks: 27

msacchi/SeismicLab

Matlab research tools to read, write and process seismic data

Language: MATLAB - Size: 20.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 82 - Forks: 20

KevinMenden/scaden

Deep Learning based cell composition analysis with Scaden.

Language: Python - Size: 1020 KB - Last synced at: 22 days ago - Pushed at: 8 months ago - Stars: 80 - Forks: 28

roflmaostc/DeconvOptim.jl

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

Language: Julia - Size: 21.1 MB - Last synced at: about 20 hours ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 6

csgwon/pytorch-deconvnet

Example of Deconvnet in PyTorch for VGG16

Language: Python - Size: 127 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 62 - Forks: 24

unfoldtoolbox/Unfold.jl

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

Language: Julia - Size: 69 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 61 - Forks: 13

Danko-Lab/TED

a fully Bayesian approach to deconvolve tumor microenvironment

Language: R - Size: 142 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 61 - Forks: 13

unfoldtoolbox/unfold

A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.

Language: MATLAB - Size: 38.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 60 - Forks: 16

NathanSkene/EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Language: R - Size: 38.3 MB - Last synced at: 27 days ago - Pushed at: 4 months ago - Stars: 57 - Forks: 26

Biomedical-Imaging-Group/DeconvolutionLab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Language: Java - Size: 2.3 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 55 - Forks: 15

Lukeli0425/Galaxy-Deconv

Official code for Galaxy Image Deconvolution for Weak Gravitational Lensing with Unrolled Plug-and-Play ADMM

Language: Jupyter Notebook - Size: 4.91 GB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 54 - Forks: 5

compneuro-da/rsHRF

rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)

Language: MATLAB - Size: 104 MB - Last synced at: 29 days ago - Pushed at: 12 months ago - Stars: 51 - Forks: 15

elgw/deconwolf

Deconvolution of widefield microscopy images and generation of point spread functions

Language: C - Size: 8.68 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 47 - Forks: 3

VladKarpushin/out_of_focus_deblur

You will learn how to recover an out-of-focus image by Wiener filter

Language: C++ - Size: 9.83 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 41 - Forks: 13

VladKarpushin/motion_deblur

You will learn how to recover a motion blur image by Wiener filter

Language: Matlab - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 39 - Forks: 8

cansysbio/ConsensusTME

ConsensusTME Gene Sets and R Script

Language: R - Size: 4.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 36 - Forks: 17

CompEpigen/methylbert

A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

Language: Jupyter Notebook - Size: 3.02 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 30 - Forks: 4

horizon-research/systolic-array-dataflow-optimizer

A general framework for optimizing DNN dataflow on systolic array

Language: Python - Size: 61.5 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 29 - Forks: 9

jrbourbeau/pyunfold

Iterative unfolding for Python

Language: Python - Size: 6.82 MB - Last synced at: 4 days ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 13

allgebrist/Causal-Deconvolution-of-Networks

Causal Deconvolution of Networks by Algorithmic Generative Models

Language: R - Size: 659 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 27 - Forks: 10

WWXkenmo/ENIGMA

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

Language: HTML - Size: 309 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 25 - Forks: 5

ajitjohnson/imsig

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

Language: R - Size: 285 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 25 - Forks: 7

theislab/hadge

Comprehensive pipeline for donor demultiplexing in single cell

Language: Nextflow - Size: 8.79 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 24 - Forks: 8

luczeng/MotionBlur

Blind deconvolution of motion blur

Language: Python - Size: 55.5 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 1

zafarrafii/CQHC-Python

Constant-Q harmonic coefficients (CQHCs), a timbre feature designed for music signals.

Language: Jupyter Notebook - Size: 84.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 1

MacDumi/RAMAN-Deconvolution

Deconvolution of Raman spectra

Language: Python - Size: 646 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 23 - Forks: 10

w-hc/pcv

Pixel Consensus Voting for Panoptic Segmentation (CVPR 2020)

Language: Python - Size: 96.7 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 23 - Forks: 3

wuaipinglab/ImmuCC

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

Language: R - Size: 2.16 MB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 22 - Forks: 25

HyeongseokSon1/CNN_deconvolution

CNN based non-blind deconvolution (presented at ICCP 2017)

Language: C++ - Size: 9.13 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 20 - Forks: 9

kidanger/high-noise-deblurring

Efficient Blind Deblurring under High Noise Levels (with online demo)

Language: C - Size: 6.95 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 17 - Forks: 5

christacaggiano/cell-free-dna-reading-list

Important papers relating to the biology of cell free DNA

Size: 28.3 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 17 - Forks: 3

LTS5/us-non-stationary-deconv

A Physical Model of Non-stationary Blur in Ultrasound Imaging

Language: Matlab - Size: 180 MB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 17 - Forks: 13

Papatheodorou-Group/CATD_snakemake

Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

Language: R - Size: 27.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 15 - Forks: 3

akuhara/MC3deconv

Bayeisan inversion to recover Green's functions of receiver-side structures from teleseismic waveforms

Language: Fortran - Size: 3.84 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 15 - Forks: 6

hyeonsangjeon/disparity-based-space-vagriant-image-deblurring

“Disparitybased space-variant image deblurring,” Signal Processing: Image Communication, vol. 28, no. 7, pp. 792–808, 2013.

Size: 20.5 MB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 14 - Forks: 0

bdsc-tds/SPLIT

Profile purification of single-cell spatial transcriptomics data

Language: R - Size: 2.98 MB - Last synced at: about 20 hours ago - Pushed at: about 21 hours ago - Stars: 13 - Forks: 0

BioimageAnalysisCoreWEHI/napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

Language: Jupyter Notebook - Size: 179 MB - Last synced at: 22 days ago - Pushed at: 24 days ago - Stars: 13 - Forks: 4

eguomin/microImageLib

A collection of 3D image processing functions and applications with GPU implementation

Language: C++ - Size: 80 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 12 - Forks: 4

micsthepick/REAPERDenoiser Fork of Nbickford/REAPERDenoiser

A JSFX denoiser for REAPER based on Norbert Weiner's deconvolution algorithm.

Language: Shell - Size: 22 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 11 - Forks: 0

FerreolS/tipi4icy

tipi4icy is a collection of Icy plugins based on TiPi

Language: Java - Size: 2.2 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 2

fakahil/PyPD

This python package allows the user to retrieve the wavefront aberrations in an optical system using the powerful tool of Phase Diversity, and use the PSF (MTF) to restore aberrated data.

Language: Python - Size: 201 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 11 - Forks: 2

WeisongZhao/SACD

Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)

Language: MATLAB - Size: 27 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 11 - Forks: 4

Jarvis73/conv_arithmetic

Convolution and Transposed Convolution in a Matrix Multiplication View

Language: Python - Size: 2.25 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 11 - Forks: 0

BIMSBbioinfo/deconvR

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

Language: R - Size: 39.8 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 3

jhell96/Deep-Blind-Deblur

A deep neural network for kernel-blind image deblurring

Language: HTML - Size: 103 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 10 - Forks: 0

jolideco/jolideco

A Python package for Poisson joint likelihood deconvolution

Language: Python - Size: 4.14 MB - Last synced at: 22 days ago - Pushed at: 2 months ago - Stars: 9 - Forks: 3

mdtanker/RIS_basement_sediment

Ross Ice Shelf basement depths and sediment thickness

Language: Jupyter Notebook - Size: 682 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 9 - Forks: 3

purbayankar/DeepDeconvResUNet

Landslide segmentation using Deep Deconvolutional Residual UNet

Language: Jupyter Notebook - Size: 144 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 2

CMUSchwartzLab/RAD

Robust and Accurate Deconvolution

Language: Jupyter Notebook - Size: 111 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 2

hijizhou/PureLetDeconv

PURE-LET image deconvolution

Language: Java - Size: 73.5 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 9 - Forks: 8

WireCell/wire-cell-toolkit Fork of brettviren/wire-cell-toolkit

Toolkit for Liquid Argon TPC Simulation and Reconstruction

Language: C++ - Size: 72.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 8 - Forks: 24

GfellerLab/MoDec

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

Language: R - Size: 11.3 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0

alex-lechner/PyTorch-GAN

Creating artificial images with a Generative Adversarial Network written in PyTorch.

Language: Python - Size: 304 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 8

UrszulaCzerwinska/DeconICA

Deconvolution of transcriptome through Immune Component Analysis

Language: Matlab - Size: 262 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 5

cpcdoy/img_proc

Blurred Image Reconstruction

Language: C++ - Size: 5.63 MB - Last synced at: over 2 years ago - Pushed at: about 8 years ago - Stars: 8 - Forks: 2

smith6jt-cop/KINTSUGI

Jupyter notebook based multiplex image processing pipeline.

Language: Jupyter Notebook - Size: 533 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 7 - Forks: 0

vladscript/FinderSpiker

Signal Processing Toolbox for Calcium Imaging Data

Language: MATLAB - Size: 39.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

pawbz/FocusedBlindDecon.jl

FBD: Multi-channel blind deconvolution with focusing constraints

Language: Julia - Size: 1.52 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 2

fergarciadlc/FFT-conv-decv

Fast convolution and deconvolution functions using Fast Fourier Transform (FFT)

Language: MATLAB - Size: 1.01 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 1

dpscience/DLTReconvolution

DLTReconvolution - A Python based software for the analysis of lifetime spectra using the iterative least-square reconvolution method

Language: Python - Size: 412 KB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 6

abeduplaa/BlindDeconvolutionGPU

Speeding up blind deconvolution of a blurred image by using GPUs

Language: Cuda - Size: 48.4 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 7 - Forks: 0

SciComp8/NGSOmics_Programming

Computational biology/bioinformatics workflows, codes, tech & concept notes on NGS data

Language: HTML - Size: 8.32 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 6 - Forks: 0

takushim/momomagick

Python toolkit for 2D/3D image processing using CPU or GPU

Language: Python - Size: 23 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 0

alcarbone/S5P_SISR_Toolbox

Sentinel-5P Single-Image Super-Resolution Toolbox

Language: Python - Size: 361 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 3

yymao/abundancematching

A Python package for subhalo abundance matching (SHAM) with scatter.

Language: Python - Size: 39.1 KB - Last synced at: 1 day ago - Pushed at: 5 months ago - Stars: 6 - Forks: 1

ChristianOrr/feature-attribution-methods-jax

Suite of methods that create attribution maps from image classification models.

Language: Jupyter Notebook - Size: 1.72 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 6 - Forks: 1

benjaminpope/sibylla

Gradient Descent Image Reconstruction

Language: Jupyter Notebook - Size: 3.08 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 0

diegommcc/digitalDLSorteR

digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data

Language: R - Size: 339 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 4

samsonq/COVID-XAI

Implementation of explainability algorithms (layer-wise relevance propagation, local interpretable model-agnostic explanations, gradient-weighted class activation mapping) on computer vision architectures to identify and explain regions of COVID 19 pneumonia in chest X-ray and CT scans.

Language: Jupyter Notebook - Size: 1.47 GB - Last synced at: 29 days ago - Pushed at: about 4 years ago - Stars: 6 - Forks: 0

CMUSchwartzLab/NND

Neural network deconvolution

Language: Jupyter Notebook - Size: 85 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 0

LieberInstitute/DeconvoBuddies

Helper Functions for LIBD Deconvolution

Language: R - Size: 63.3 MB - Last synced at: 30 days ago - Pushed at: 3 months ago - Stars: 5 - Forks: 1

diegommcc/SpatialDDLS

Deconvolution of spatial transcriptomics data based on Deep Learning

Language: R - Size: 131 MB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 5 - Forks: 1

SayantanDutta95/QAB-PnP-ADMM-Deconvolution

Plug-and-Play ADMM scheme based on an adaptive denoiser using the Schroedinger equation's solutions of quantum physics.

Language: MATLAB - Size: 142 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

Juanx65/DeepDeconvV2

Deep Deconvolution for Seismic Waves with Real and Simulated Distributed Acoustic Sensing Data: State-of-the-Art Review

Language: Python - Size: 33.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

ctom2/lucyd-deconvolution

A Feature-Driven Richardson-Lucy Deconvolution Network

Language: Python - Size: 1.03 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

fburic/candia

Canonical Decomposition of Data-Independent-Acquired Spectra

Language: Python - Size: 2.55 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 2

hcherkaoui/pybold

Semi-blind deconvolution for fMRI (BOLD signal)

Language: Python - Size: 176 KB - Last synced at: 3 months ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 2

BDomzal/magnetstein

Tools for analysis of nuclear magnetic resonance (NMR) spectra using the Wasserstein metric.

Language: Python - Size: 6.64 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 4

pashtari/deconver

Official PyTorch Implementation of "Deconver: A Deconvolutional Network for Medical Image Segmentation"

Language: Python - Size: 20.5 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 0

LieberInstitute/TREG

Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

Language: R - Size: 24.1 MB - Last synced at: 11 days ago - Pushed at: 6 months ago - Stars: 4 - Forks: 2

Liuy12/SCdeconR

Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference

Language: HTML - Size: 38.8 MB - Last synced at: 17 days ago - Pushed at: 11 months ago - Stars: 4 - Forks: 0

lmassier/hWAT_singlecell

meta-analysis of new and published human WAT single cell data

Language: R - Size: 256 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0

Whadup/weightedFastText Fork of facebookresearch/fastText

Weighted FastText is a library for fast text classification with weighted examples

Language: C++ - Size: 7.6 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0

saswat0/Sketchy

Convert Sketch to Real World Images

Language: Jupyter Notebook - Size: 1.18 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 4 - Forks: 0

YuFengUofR/dataflow_optimizer

A general framework for optimizing DNN dataflow on systolic array

Language: Python - Size: 182 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 0

looninho/CUDAEBL

Use CUDA for eBeam Lithography Simulation

Language: Python - Size: 18.2 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 2

mayankskii/TGAnalysis

ThermoGravimetric Analysis (TGA) helps in understanding and optimising pyrolysis process.

Language: MATLAB - Size: 42.4 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 4

Marzi-lab/CHAS

Cell type-specific Histone Acetylation Score

Language: R - Size: 169 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 3 - Forks: 1

denniepatton/Keraon

As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.

Language: Python - Size: 1.82 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2

KnutOlaD/Deconv_code_data

Deconvolution of the growth law equation. Theory and experiments published at https://doi.org/10.5194/gi-11-293-2022

Language: Python - Size: 1.35 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

CostaLab/CimpleG

CimpleG, an R package to find (small) CpG signatures.

Language: R - Size: 121 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

Paradigm-Free-Mapping/splora

Sparse and Low-Rank Paradigm Free Mapping.

Language: Python - Size: 132 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

imcf/hrm-omero

The HRM-OMERO connector

Language: Python - Size: 497 KB - Last synced at: 30 days ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

kidanger/degradations-deconvolution

Non blind deconvolution for realistic degradations (saturation, quantization, gamma correction)

Language: C - Size: 10.6 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

Related Topics
image-processing 23 deep-learning 19 python 14 deblurring 14 inverse-problems 13 microscopy 11 tensorflow 11 single-cell 10 single-cell-rna-seq 10 neural-network 9 convolutional-neural-networks 9 computer-vision 9 rna-seq 9 signal-processing 8 methylation 8 matlab 8 bulk-rna-seq 8 fmri 7 convolution 7 r 6 spatial-transcriptomics 6 machine-learning 6 transcriptomics 6 bioinformatics 6 opencv 6 pytorch 6 image-restoration 6 gpu 5 unet 5 scrna-seq 5 cnn 5 non-negative-matrix-factorization 5 segmentation 5 calcium-imaging 5 autoencoder 5 generative-adversarial-network 5 blind-deconvolution 4 regularization 4 immune 4 fmri-data-analysis 4 imaging 4 genomics 4 tumor 4 spectroscopy 4 denoising 4 rna-seq-analysis 4 gene-expression 4 fluorescence 4 admm 3 restoration 3 audio 3 fft 3 sparse 3 psf 3 simulation 3 bioconductor 3 optimization 3 transpose-convolution 3 classification 3 composition 3 immunology 3 deconvolution-methods 3 frequency-analysis 3 whole-genome-sequencing 3 fourier-transform 3 wiener 3 blind-source-separation 3 vgg16 3 matrix-factorization 3 data-analysis 3 statistics 3 interferometry 3 clustering 3 richardson-lucy 3 gan 3 image-reconstruction 3 jupyter-notebook 3 image 3 super-resolution 3 batch-normalization 2 image-inpainting 2 x-ray-astronomy 2 eeg 2 source-extraction 2 motion-correction 2 event-related-potentials 2 cnmf 2 deep-neural-networks 2 cfdna 2 metabolomics 2 frequency-modulation 2 2-photon 2 overlap 2 parameter-estimation 2 splines 2 richardson-lucy-deconvolution 2 edge-detection 2 resampling 2 network-analysis 2 multi-echo 2