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GitHub / NathanSkene / EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NathanSkene%2FEWCE
Stars: 51
Forks: 24
Open Issues: 8
License: None
Language: R
Repo Size: 35.2 MB
Dependencies:
47
Created: over 6 years ago
Updated: 14 days ago
Last pushed: 16 days ago
Last synced: 14 days ago
Commit Stats
Commits: 246
Authors: 15
Mean commits per author: 16.4
Development Distribution Score: 0.683
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/NathanSkene/EWCE
Topics: deconvolution, single-cell, single-cell-rna-seq, transcriptomics
Files
Dependencies
- R >= 4.2 depends
- RNOmni >= 1.0 depends
- BiocParallel * imports
- DelayedArray * imports
- HGNChelper * imports
- Matrix * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- data.table * imports
- dplyr * imports
- ewceData * imports
- ggplot2 * imports
- limma * imports
- methods * imports
- orthogene >= 0.99.8 imports
- parallel * imports
- reshape2 * imports
- stats * imports
- stringr * imports
- utils * imports
- BiocStyle * suggests
- DESeq2 * suggests
- DelayedMatrixStats * suggests
- MAST * suggests
- badger * suggests
- cowplot * suggests
- ggdendro * suggests
- grDevices * suggests
- grid * suggests
- gridExtra * suggests
- knitr * suggests
- magick * suggests
- markdown * suggests
- memoise * suggests
- readxl * suggests
- remotes * suggests
- rmarkdown * suggests
- scales * suggests
- sctransform * suggests
- testthat >= 3.0.0 suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact v2 composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- bioconductor/bioconductor_docker devel build