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GitHub / diegommcc / digitalDLSorteR

digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data

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Stars: 6
Forks: 4
Open Issues: 0

License: None
Language: R
Repo Size: 339 MB
Dependencies: 37

Created: over 3 years ago
Updated: 7 months ago
Last pushed: over 1 year ago
Last synced: 6 months ago

Topics: deconvolution, deep-learning, rna-seq, single-cell

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Readme

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Dependencies

DESCRIPTION cran

R >= 4.0.0 depends
Matrix * imports
Matrix.utils * imports
RColorBrewer * imports
S4Vectors * imports
SingleCellExperiment * imports
SummarizedExperiment * imports
dplyr * imports
ggplot2 * imports
ggpubr * imports
gtools * imports
keras * imports
methods * imports
pbapply * imports
reshape2 * imports
reticulate * imports
rlang * imports
stats * imports
tensorflow * imports
tidyr * imports
tools * imports
zinbwave * imports
BiocParallel * suggests
DelayedArray * suggests
DelayedMatrixStats * suggests
HDF5Array * suggests
knitr * suggests
rhdf5 * suggests
rmarkdown * suggests
testthat * suggests

.github/workflows/check-bioc.yml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/upload-artifact master composite
conda-incubator/setup-miniconda v2 composite
docker/build-push-action v1 composite
r-lib/actions/setup-pandoc master composite
r-lib/actions/setup-r master composite