protein-structure 29 protein 20 machine-learning 20 bioinformatics 19 deep-learning 19 protein-sequences 11 computational-biology 10 proteins 10 python 10 protein-protein-interaction 9 structural-biology 9 rosetta 8 protein-sequence 8 artificial-intelligence 8 pytorch 7 protein-structure-prediction 6 protein-folding 5 antibody 4 geometric-deep-learning 4 protein-function-prediction 4 denovo-design 4 protein-docking 4 molecular-biology 4 diffusion-models 4 graph-neural-networks 4 pdb 4 bioinformatics-tool 3 ab-initio 3 pyrosetta 3 structural-bioinformatics 3 antibody-design 3 dna 3 biophysics 3 drug-discovery 3 generative-ai 3 alphafold2 3 biomolecule 2 bayesian-optimization 2 molecular-dynamics 2 generative-model 2 coiled-coil 2 protein-engineering 2 rna-structure-prediction 2 colabfold 2 alphafold 2 swarm-intelligence 2 dataset 2 protein-data-bank 2 ai 2 scientific-computing 2 docking 2 representation-learning 2 peptides 2 protein-dynamics 2 protein-fitness-prediction 2 inverse-folding 2 transformers 2 pytorch-geometric 2 attention-mechanism 2 rmsd 2 jupyter-notebook 2 science 2 amino-acids 2 denovo 2 data-visualization 2 data-analysis 2 topology 2 llm 2 convolutional-neural-networks 2 drug-design 2 generative-ml 2 ai4science 2 protein-ai 2 publication-data 2 functional-protein-design 2 jax 2 denoising-diffusion 2 numpy 1 pose 1 molecule 1 rust 1 dgl 1 game-engine 1 molecular-simulation 1 gene-regulatory-networks 1 tutorial 1 active-learning 1 uncertainty-estimation 1 uncertainty-neural-networks 1 uncertainty-quantification 1 bioml 1 gpt-4 1 denovo-design-text 1 text-protein 1 hpc 1 neural-network 1 equivariant-network 1 ligand-binding 1 protein-representation-learning 1 foundation-model 1