MIT-LCP/mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Language: Jupyter Notebook - Size: 19.5 MB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 2,960 - Forks: 1,609

MIT-LCP/wfdb-python

Native Python WFDB package

Language: Jupyter Notebook - Size: 163 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 792 - Forks: 313

MIT-LCP/eicu-code

Code and website related to the eICU Collaborative Research Database

Language: Jupyter Notebook - Size: 18 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 342 - Forks: 227

MIT-LCP/mimic-cxr 📦

Code, documentation, and discussion around the MIMIC-CXR database

Language: Jupyter Notebook - Size: 1.08 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 231 - Forks: 50

fernandoandreotti/cinc-challenge2017

ECG classification from short single lead segments (Computing in Cardiology Challenge 2017 entry)

Language: MATLAB - Size: 20 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 146 - Forks: 70

MIT-LCP/mimic-website

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

Language: CSS - Size: 51.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 121 - Forks: 124

VectorInstitute/cyclops

A toolkit for evaluating and monitoring AI models in clinical settings

Language: Python - Size: 27.4 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 86 - Forks: 13

MIT-LCP/mimic-workshop

Introduction to MIMIC-III, the Critical Care Database

Language: Jupyter Notebook - Size: 6.66 MB - Last synced at: 7 days ago - Pushed at: about 8 years ago - Stars: 86 - Forks: 37

fernandoandreotti/fecgsyn

FECGSYN toolbox for ECG and fetal ECG simulation

Language: MATLAB - Size: 134 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 80 - Forks: 27

MIT-LCP/mimic-iii-paper

Repository for the paper describing MIMIC-III

Language: Jupyter Notebook - Size: 10.6 MB - Last synced at: 5 months ago - Pushed at: over 9 years ago - Stars: 78 - Forks: 37

physiozoo/mhrv

Matlab toolbox for calculating Heart-Rate Variability metrics on ECG signals

Language: MATLAB - Size: 1.91 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 68 - Forks: 17

MIT-LCP/physionet-build

The new PhysioNet platform.

Language: JavaScript - Size: 89.8 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 66 - Forks: 26

zzklove3344/ApneaECGAnalysis

This project includes preprocessing of APNEA-ECG database and a LSTM-RNN model for per-segment OSA detection.

Language: Python - Size: 354 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 41 - Forks: 17

philipdarke/torchtime

Benchmark time series data sets for PyTorch

Language: Python - Size: 3.07 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 5

avik-pal/RegNeuralDE.jl

Official Implementation of "Opening the Blackbox: Accelerating Neural Differential Equations by Regularizing Internal Solver Heuristics" (ICML 2021)

Language: Julia - Size: 259 KB - Last synced at: 3 months ago - Pushed at: almost 3 years ago - Stars: 26 - Forks: 4

victorkifer/ecg-af-detection-physionet-2017

AF Classification from a short single lead ECG recording: the PhysioNet/Computing in Cardiology Challenge 2017

Language: Python - Size: 30.1 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 25 - Forks: 6

brianhill11/ABPImputation

Package for imputing the arterial blood pressure (ABP) waveform from non-invasive physiological waveforms (PPG & ECG) using a deep neural network

Language: Python - Size: 22.8 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 24 - Forks: 5

nerajbobra/lstm-qrs-detector

CNN-LSTM based QRS detector for ECG signals

Language: Jupyter Notebook - Size: 16.8 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 24 - Forks: 7

hdsingh/Fetal-Distress-Classification

Project to save innocent infant lives using Cardiotocography and CNN image classification

Language: Jupyter Notebook - Size: 45.5 MB - Last synced at: 11 days ago - Pushed at: over 6 years ago - Stars: 22 - Forks: 9

rfonod/deepsleep2

😴 DeepSleep2 is a compact U-Net-inspired convolutional neural network with 740,551 parameters, designed to predict non-apnea sleep arousals from full-length multi-channel polysomnographic recordings at 5-millisecond resolution. Achieves similar performance to DeepSleep with lower computational cost.

Language: Jupyter Notebook - Size: 791 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 17 - Forks: 4

simonsanvil/ECG-classification-MLH

Diagnose types of Arrhythmia from ECG signals using Machine Learning and Deep Learning models.

Language: Jupyter Notebook - Size: 43.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 6

rohitdwivedula/ecg_benchmarking

Multiclass and multilabel classification of ECG signals using various deep learning models.

Language: Python - Size: 37.9 MB - Last synced at: 6 days ago - Pushed at: almost 5 years ago - Stars: 11 - Forks: 1

abhilampard/Physionet-CSV-Conversion

Code to access the ECG data from Physionet using Python.

Language: Python - Size: 3.91 KB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 11 - Forks: 8

jirispilka/CTGViewer

The CTGViewer: display cardiotocography (CTG) records -- fetal heart rate and uterine contractions.

Language: Python - Size: 2.9 MB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 10 - Forks: 1

Dubrzr/SignalAnnotation

Annotate signal, timeseries, waveforms...

Language: HTML - Size: 250 KB - Last synced at: 6 months ago - Pushed at: about 5 years ago - Stars: 9 - Forks: 0

MIT-LCP/eicu-data-paper

Data descriptor of the eICU Collaborative Research Database for submission to Scientific Data

Language: Jupyter Notebook - Size: 1.31 MB - Last synced at: 5 months ago - Pushed at: about 7 years ago - Stars: 9 - Forks: 6

MIT-LCP/license-and-dua

The PhysioNet Data Use Agreement and License

Size: 192 KB - Last synced at: 5 months ago - Pushed at: 10 months ago - Stars: 7 - Forks: 13

gzoumpourlis/Ensemble-MI

Language: Python - Size: 42 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

KryeKuzhinieri/predicting-driver-stress-using-deep-learning

Predicting driver stress levels using Physionet's SRAD (drivedb) dataset with methods such as LSTMs, RNNs, CNNs

Language: Python - Size: 21.5 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 0

DhilipSanjay/Human-Biomechanic-Analysis

Deep Learning Models for the Early Detection of Parkinson’s Disease using the motor-based symptoms.

Language: Jupyter Notebook - Size: 21.7 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0

Dubrzr/mimic3-scripts

Language: Jupyter Notebook - Size: 22.9 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 4

miguelaltuve/multichannelQRSdetector

Code of the paper Optimal data fusion for the improvement of QRS complex detection in multi-channel ECG recordings

Language: MATLAB - Size: 651 MB - Last synced at: 2 days ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

brianhill11/PPG_QI

Repo for PPG Quality Index algorithm

Language: Python - Size: 2.47 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

dikioth/ECG-reconstruction

Reconstruction of ECG missing signals using RLS and ADAM optimizer.

Language: MATLAB - Size: 21.6 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 1

MIT-LCP/eicu-website

Repository moved

Size: 16.6 MB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 3

trialan/eeg

Classification of EEG motor-imagery data.

Language: Python - Size: 4.14 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

oclay1st/WFDB

Java WFDB Library

Language: Java - Size: 942 KB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

BrahimFakri/Patient-Health-Data-Analysis-And-Feature-Extraction-For-Machine-Learning

Embeddings generation from MIMIC-IV and MIMIC-CXR

Language: Jupyter Notebook - Size: 125 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

lisaong/hss

Workshop content for the Humanising Smart Systems course

Language: Jupyter Notebook - Size: 104 MB - Last synced at: 7 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1

TIAGOOOLIVEIRA/ECG-Heart-Disease-Detection-Using-RandomForest-and-Multi-Layer-Perceptron

Language: Jupyter Notebook - Size: 7.11 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

MIT-LCP/querybuilder-issue

Public Issue tracker for the Query Builder repo

Size: 1.95 KB - Last synced at: 5 months ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 3

Onaga08/physio-ecg-tools

Physionet.org is a large repository of databases. This repo, with the aim of helping NIT Rourkela with their ECG research, extracts all databases containing ECG signals, and converts the given format of signals to csv files for multiple use-cases

Language: Python - Size: 1.87 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

KryeKuzhinieri/Physionet-CSV-Conversion Fork of abhilampard/Physionet-CSV-Conversion

Code to access the ECG data from Physionet using Python.

Language: Python - Size: 5.86 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

gabrielriqu3ti/ECG_QRS_detection_Pan_Tompkins

Implementation of the QRS detection algorithm developed by Pan-Tompkins and evaluation on 9 signals of the MIT-BIH Arrhythmia Database.

Language: MATLAB - Size: 11.5 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

michelole/reassess

Relevance Assessment of Clinical Statements

Language: Java - Size: 63.5 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

akram-mohammed/physionet-challenge-2019

physionet-challenge-2019

Language: Python - Size: 48.8 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

truongnmt/ecg-process

Quick shell script to preprocess Atrial Fibrillation Database and Normal Sinus Rhythm Database

Language: Jupyter Notebook - Size: 232 KB - Last synced at: 6 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

MCP-Pipeline/mcpstack-mimic

[MCP Tool] MIMIC, let the LLM perform the SQL queries to the MIMIC-IV popular healthcare database

Language: Python - Size: 37 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 1

SM2A/Biomedical_Signal_Processing_Course_Project

🎓💻University of Tehran Biomedical Signal Processing Course Projects - Fall 2023

Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Alishamsnia/overlap-method

A matlab code for processing echo by enveloping

Language: MATLAB - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Alishamsnia/echo-processing

This is a matlab code for analyzing echo.

Size: 13.8 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

jitinchekka/predicting-driver-stress

Course Project for BSPA

Language: Python - Size: 111 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

lcsrodriguez/headat-signals

.hea/.dat ECG-files processing and converting tool (CLI & module) for deeper integration in the datascience ecosystem

Language: Python - Size: 105 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

reneahlsdorf/SEVA-Medical-Sections-Extraction

The repository for the SEVA PhysionNet publication "Semi-supervised Extraction, Validation and model-based Analysis of Medical Sections in MIMIC-III Patient Notes"

Language: Python - Size: 28.3 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

puzzlemoondev/pndl

Simple PhysioNet crawler & downloader

Language: Python - Size: 37.1 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

mcsltd/ecganncmp

The program is used to compare annotation files obtained as a result of processing a set of ECG records

Language: Python - Size: 55.7 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

mcsltd/ecganncompare

The program is used to compare annotation files obtained as a result of processing a set of ECG records

Language: Python - Size: 1.66 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

PAminai/fNIRS-Read

This is the MATLAB function to read fNIRS signal provided on physionet

Language: MATLAB - Size: 22.5 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

JeiKeiLim/Atrial-Fibrillation-Detection-from-BIH-MIT-Database Fork of danthompson41/Atrial-Fibrillation-Detection-from-BIH-MIT-Database

Takes data from the atrial fibrillation database from Physionet, and attempts to detect that atrial fibrillation using a number of statistical methods. Matlab code.

Language: MATLAB - Size: 112 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

jameshughes89/intracranialPressureNonlinearModelling

Data, scripts, and an (old) version of the GP system used to generate the nonlinear models modelling the fMRI data. Results publiched in CIBCB 2017.

Language: Python - Size: 17.8 MB - Last synced at: over 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1

MIT-LCP/mimic-code-paper

Paper describing the MIMIC Code Repository

Language: Jupyter Notebook - Size: 4.97 MB - Last synced at: 23 days ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0