Topic: "rna-secondary-structure"
fjossinet/RNArtist
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
Language: Kotlin - Size: 31.7 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 158 - Forks: 10
lbcb-sci/RiNALMo
RiboNucleic Acid (RNA) Language Model
Language: Python - Size: 363 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 89 - Forks: 16
jaswindersingh2/SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
Language: Perl - Size: 6.82 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 81 - Forks: 30
r2dt-bio/R2DT
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
Language: Python - Size: 237 MB - Last synced at: 18 days ago - Pushed at: 19 days ago - Stars: 72 - Forks: 13
fjossinet/RNArtistCore
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
Language: Kotlin - Size: 25.8 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 26 - Forks: 6
jaswindersingh2/SPOT-RNA2
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
Language: Perl - Size: 185 MB - Last synced at: 6 months ago - Pushed at: about 4 years ago - Stars: 25 - Forks: 8
febos/SQUARNA
RNA secondary structure prediction tool
Language: Jupyter Notebook - Size: 162 MB - Last synced at: about 11 hours ago - Pushed at: about 12 hours ago - Stars: 16 - Forks: 2
marcom/RNAstructure.jl
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
Language: Julia - Size: 89.8 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 1
marcom/FoldRNA.jl
Nucleic acid secondary structure prediction and analysis
Language: Julia - Size: 118 KB - Last synced at: 13 days ago - Pushed at: 6 months ago - Stars: 5 - Forks: 1
marcom/PlotRNA.jl
Plot nucleic acid secondary structures with Julia
Language: Julia - Size: 94.7 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1
lemerleau/RAFFT
RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform
Language: Python - Size: 83.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 1
bioinformatics-torvergata/BRIO
BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)
Language: HTML - Size: 227 MB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0
bioinformatics-torvergata/RIG
Supporting data and scripts for "Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments" (https://doi.org/10.1093/nargab/lqab007)
Language: Python - Size: 174 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0
lipan6461188/RNA_Covariation
A tutorial about RNA covary base pairs calling
Language: Python - Size: 5.33 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1
febos/SQUARNA-data
SQUARNA benchmark data
Language: Jupyter Notebook - Size: 105 MB - Last synced at: about 22 hours ago - Pushed at: about 23 hours ago - Stars: 0 - Forks: 0
MagGenix/ultratherm
A package for design of DNA/RNA temperature sensitive structures.
Language: Python - Size: 1.2 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1
kris96tian/RNA_App
RNA Secondary Structure Predictor | Interactive tool for the prediction and visualization of RNA secondary structures by maximizing the number of base pairs
Language: Python - Size: 69.3 KB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
