soedinglab/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

Language: C - Size: 30.9 MB - Last synced at: 4 days ago - Pushed at: 24 days ago - Stars: 1,636 - Forks: 220

rcedgar/muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Language: C++ - Size: 67.8 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 240 - Forks: 25

BioinformaticsToolsmith/MeShClust

MeShClust: an intelligent tool for clustering DNA sequences

Language: C++ - Size: 154 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 32 - Forks: 11

millanp95/DeLUCS

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

Language: Python - Size: 634 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 22 - Forks: 10

bailey-lab/SeekDeep

Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

Language: C++ - Size: 63.7 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 16 - Forks: 7

soedinglab/MMseqs

Language: C++ - Size: 552 KB - Last synced at: 6 days ago - Pushed at: over 8 years ago - Stars: 14 - Forks: 4

BioinformaticsToolsmith/MeShClust2

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Language: C++ - Size: 184 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 0

krejciadam/hammock

Cluster up to millions of peptide sequences on shared sequence motifs.

Language: Java - Size: 11.1 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 11 - Forks: 2

predict-idlab/MCAppAnalysis

Code to reproduce the experiments and the proposed visualization from 'Data mining in the development of mHealth apps: assessing in-app navigation through Markov Chain analysis'

Language: Jupyter Notebook - Size: 1.35 MB - Last synced at: about 1 month ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 4

wajidarshad/CD-Hit-parse_cluster_file

CD HIT cluster file parser

Language: Python - Size: 26.4 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 3

mooreryan/derep_seqs 📦

Dereplicate long sequences

Language: C - Size: 63.5 KB - Last synced at: 7 days ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0

IlyinVyacheslav/BioInformatics

Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course

Language: Jupyter Notebook - Size: 14.5 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0

mrzResearchArena/protein-clustering

Protein Clustering

Language: Jupyter Notebook - Size: 23.7 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0