Topic: "sequence-similarity"
refresh-bio/FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Language: C++ - Size: 12.7 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 155 - Forks: 27
refresh-bio/kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Language: C++ - Size: 4.07 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 83 - Forks: 17
refresh-bio/vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Language: Python - Size: 10.2 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 46 - Forks: 1
giffordlabcvr/DIGS-tool
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
Language: Perl - Size: 49.1 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 8 - Forks: 6
DeepthiSudharsan/CGR-for-Sequence-Similarity
(Semester 4) Intelligence of Biological Systems - End Semester Project
Language: Jupyter Notebook - Size: 2.05 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 2
refresh-bio/LZ-ANI
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
Language: C++ - Size: 1.25 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0